Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_B10
(634 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 48 1e-05
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 48 1e-05
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 37 0.026
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 36 0.034
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 36 0.034
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 36 0.034
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 36 0.034
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 35 0.080
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 35 0.11
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 34 0.18
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 32 0.74
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 31 1.7
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 31 1.7
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 31 1.7
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 30 3.0
AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran... 29 4.0
AY122264-1|AAM52776.1| 311|Drosophila melanogaster SD14666p pro... 28 9.1
AE014296-2771|AAF49436.1| 307|Drosophila melanogaster CG4098-PA... 28 9.1
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 48.0 bits (109), Expect = 1e-05
Identities = 27/76 (35%), Positives = 38/76 (50%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKPNEKPSAVDLSICTPDLAS 307
N H +G TT+ G +D +L LLN SPT + N + +DL++C+P LA
Sbjct: 133 NGWHHPWGSPTTNKRGKITHRFIDNMHLILLNDKSPTHFSTHNTY-THIDLTLCSPILAP 191
Query: 306 XHSWYTSSSTFGSDHF 259
W + GSDHF
Sbjct: 192 HAKWKILNDLHGSDHF 207
Score = 29.5 bits (63), Expect = 4.0
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 135 ASYRPIALSSVLTKVAEHLVKNRLEW 58
+SYRPI+L+ + K+ + ++ RL W
Sbjct: 506 SSYRPISLNCCIAKILDKIIAKRLWW 531
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 48.0 bits (109), Expect = 1e-05
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKPNEKPSAVDLSICTPDLAS 307
N ++G T+T G + ++ +L +LN GSPT + N + +D+S+ +P +A
Sbjct: 137 NSWSPLWGSPRTNTRGKKIETVILENSLIVLNDGSPTHLSTHNTF-THIDISLISPQIAH 195
Query: 306 XHSWYTSSSTFGSDHF 259
SW S + GSDHF
Sbjct: 196 MCSWSISDNLHGSDHF 211
Score = 36.3 bits (80), Expect = 0.034
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 144 NDVASYRPIALSSVLTKVAEHLVKNRLEWF 55
+D+ SYRPI+L S L K E ++ RL WF
Sbjct: 508 SDINSYRPISLLSCLGKTLEKIIAQRLTWF 537
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 36.7 bits (81), Expect = 0.026
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 313
N H+ +GC G L + + ++ ++ TGS T K PSA+D SIC L
Sbjct: 167 NAKHRQWGCIRACQRGAALYDAIQADSMAEIVATGSATHFPHDTRKSPSAIDFSIC-KRL 225
Query: 312 ASXHSWYTSSSTFGSDH 262
+SS+ SDH
Sbjct: 226 GRYEKRISSSAHLSSDH 242
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 144 NDVASYRPIALSSVLTKVAEHLVKNRL 64
N+ SYRPI+L S L+K+ E L+ RL
Sbjct: 565 NEPKSYRPISLLSGLSKMFERLLLKRL 591
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 36.3 bits (80), Expect = 0.034
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 313
N H+ +GC G L E + + ++ TG T K PSA+D SIC L
Sbjct: 39 NAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC-KGL 97
Query: 312 ASXHSWYTSSSTFGSDH 262
+SS+ SDH
Sbjct: 98 GRLEKRISSSADLSSDH 114
Score = 31.9 bits (69), Expect = 0.74
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -2
Query: 147 INDVASYRPIALSSVLTKVAEHLVKNRL 64
+ND SYRPI+L S L+K+ E L+ RL
Sbjct: 436 VNDPKSYRPISLLSGLSKMFERLLLKRL 463
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 36.3 bits (80), Expect = 0.034
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 313
N H+ +GC G L E + + ++ TG T K PSA+D SIC L
Sbjct: 155 NAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC-KGL 213
Query: 312 ASXHSWYTSSSTFGSDH 262
+SS+ SDH
Sbjct: 214 GRLEKRISSSADLSSDH 230
Score = 31.9 bits (69), Expect = 0.74
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -2
Query: 147 INDVASYRPIALSSVLTKVAEHLVKNRL 64
+ND SYRPI+L S L+K+ E L+ RL
Sbjct: 552 VNDPKSYRPISLLSGLSKMFERLLLKRL 579
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 36.3 bits (80), Expect = 0.034
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 313
N H+ +GC G L E + + ++ TG T K PSA+D SIC L
Sbjct: 117 NAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC-KGL 175
Query: 312 ASXHSWYTSSSTFGSDH 262
+SS+ SDH
Sbjct: 176 GRLEKRISSSADLSSDH 192
Score = 31.9 bits (69), Expect = 0.74
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -2
Query: 147 INDVASYRPIALSSVLTKVAEHLVKNRL 64
+ND SYRPI+L S L+K+ E L+ RL
Sbjct: 514 VNDPKSYRPISLLSGLSKMFERLLLKRL 541
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 36.3 bits (80), Expect = 0.034
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 313
N H+ +GC G L E + + ++ TG T K PSA+D SIC L
Sbjct: 155 NAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC-KGL 213
Query: 312 ASXHSWYTSSSTFGSDH 262
+SS+ SDH
Sbjct: 214 GRLEKRISSSADLSSDH 230
Score = 31.9 bits (69), Expect = 0.74
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -2
Query: 147 INDVASYRPIALSSVLTKVAEHLVKNRL 64
+ND SYRPI+L S L+K+ E L+ RL
Sbjct: 552 VNDPKSYRPISLLSGLSKMFERLLLKRL 579
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 35.1 bits (77), Expect = 0.080
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRT-KPNEKPSAVDLSICTPDLA 310
N H ++G G L E L + +L TGSPTR P+ PS +D ++ +
Sbjct: 140 NARHWLWGDTCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCIDFAV-YHGIP 198
Query: 309 SXHSWYTSSSTFGSDH 262
+ T S SDH
Sbjct: 199 DHLATITQSWDLDSDH 214
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = -2
Query: 132 SYRPIALSSVLTKVAEHLVKNRL 64
SYRPI+L S L+K+ E L+ NRL
Sbjct: 513 SYRPISLLSSLSKLWERLIANRL 535
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 34.7 bits (76), Expect = 0.11
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 313
N H+ +GC G L E + + ++ TG T K PSA+D SIC L
Sbjct: 155 NAKHRQWGCTRACQRGTALYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDFSIC-KGL 213
Query: 312 ASXHSWYTSSSTFGSDH 262
+S + SDH
Sbjct: 214 GRFEKRISSGADLSSDH 230
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 144 NDVASYRPIALSSVLTKVAEHLVKNRL 64
N+ SYRPI+L S L+K+ E L+ RL
Sbjct: 553 NEPRSYRPISLLSGLSKIFERLLLKRL 579
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 33.9 bits (74), Expect = 0.18
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 313
N H+ +GC G L E + + ++ TG T K PSA+D SIC L
Sbjct: 155 NAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC-KGL 213
Query: 312 ASXHSWYTSSSTFGSDH 262
+S + SDH
Sbjct: 214 GRLEKRISSVADLSSDH 230
Score = 31.9 bits (69), Expect = 0.74
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -2
Query: 147 INDVASYRPIALSSVLTKVAEHLVKNRL 64
+ND SYRPI+L S L+K+ E L+ RL
Sbjct: 552 VNDPKSYRPISLLSGLSKMFERLLLKRL 579
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 31.9 bits (69), Expect = 0.74
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -2
Query: 141 DVASYRPIALSSVLTKVAEHLVKNRL 64
DV SYRPI+L L K+ E L+ NRL
Sbjct: 313 DVDSYRPISLLPSLGKIMERLILNRL 338
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -2
Query: 132 SYRPIALSSVLTKVAEHLVKNRLEWF 55
SYRPI+L S L+K+ E L+K RL F
Sbjct: 537 SYRPISLLSGLSKILEKLIKLRLVKF 562
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -2
Query: 132 SYRPIALSSVLTKVAEHLVKNRLEWF 55
SYRPI+L S L+K+ E L+K RL F
Sbjct: 485 SYRPISLLSGLSKILEKLIKLRLVKF 510
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKP-NEKPSAVDLSICTPDLA 310
N H ++G G ++ G+ L ++ + L TG PTR P +D ++ T +
Sbjct: 139 NASHWLWGAGRSNQRGIALANLVLNSEVDSLATGGPTRYPYGCRGSPGYIDFAL-TKGVL 197
Query: 309 SXHSWYTSSSTFGSDH 262
H+ ++ SDH
Sbjct: 198 GIHANISAVVELSSDH 213
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 141 DVASYRPIALSSVLTKVAEHLVKNRL 64
DV SYRP +L L K+ E L+ NRL
Sbjct: 511 DVDSYRPTSLLPSLGKIMERLILNRL 536
>AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse
transcriptase protein.
Length = 1217
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 366 KPNEKPSAVDLSICTPDLASXHSWYTSSST 277
K ++ P+ + LS C PDLA H+ +SS+T
Sbjct: 1182 KISKPPNDLSLSTCIPDLAMGHTNLSSSTT 1211
>AY122264-1|AAM52776.1| 311|Drosophila melanogaster SD14666p
protein.
Length = 311
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 331 NLYPRSCFXSFLVHLIIYFWQ*SFPDYHILSY*TPSL 221
N+YPRS + V FW FPDY +Y P +
Sbjct: 49 NMYPRSSVLRYPVSDEQVFWSEPFPDYCPPAYTAPHI 85
>AE014296-2771|AAF49436.1| 307|Drosophila melanogaster CG4098-PA
protein.
Length = 307
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 331 NLYPRSCFXSFLVHLIIYFWQ*SFPDYHILSY*TPSL 221
N+YPRS + V FW FPDY +Y P +
Sbjct: 45 NMYPRSSVLRYPVSDEQVFWSEPFPDYCPPAYTAPHI 81
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,219,326
Number of Sequences: 53049
Number of extensions: 405526
Number of successful extensions: 858
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2641708800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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