Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_B08
(517 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204; Euka... 150 2e-35
UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4; Bilateria|... 138 5e-32
UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3; Eukary... 134 1e-30
UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2; Ost... 122 6e-27
UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56; Euk... 120 1e-26
UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1; Enceph... 74 2e-12
UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3; Eukary... 69 6e-11
UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1; ... 67 3e-10
UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole ge... 55 1e-06
UniRef50_Q3LW97 Cluster: Ribosomal protein L27a; n=1; Bigelowiel... 50 2e-05
UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102... 48 2e-04
UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1; ... 44 0.002
UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S riboso... 40 0.034
UniRef50_Q9ZQM0 Cluster: Putative non-LTR retroelement reverse t... 34 1.7
UniRef50_Q6LXD1 Cluster: 50S ribosomal protein L15P; n=9; Euryar... 34 1.7
UniRef50_A7RPS0 Cluster: Predicted protein; n=1; Nematostella ve... 32 8.9
>UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204;
Eukaryota|Rep: 60S ribosomal protein L27a - Homo sapiens
(Human)
Length = 148
Score = 150 bits (363), Expect = 2e-35
Identities = 71/148 (47%), Positives = 87/148 (58%)
Frame = +2
Query: 50 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 229
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 230 FHFXKNKNFCPVLNLXKLWTLVSEQTXLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 409
+H +N++FCP +NL KLWTLVSEQT + A G P+I++V++ PKQ
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 410 PVIVXXXXXXXXXXXXIXDVGGACVLSA 493
PVIV I VGGACVL A
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4;
Bilateria|Rep: Ribosomal protein L27a - Ascaris suum
(Pig roundworm) (Ascaris lumbricoides)
Length = 133
Score = 138 bits (335), Expect = 5e-32
Identities = 65/115 (56%), Positives = 74/115 (64%)
Frame = +2
Query: 149 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFXKNKNFCPVLNLXKLWTLVSEQTXLKYASA 328
NAGG+HHHRIN DKYHPGYFGK+GMRNFH KN +CP +NL KLW+LVSE+T YA
Sbjct: 20 NAGGQHHHRINFDKYHPGYFGKVGMRNFHVRKNGLYCPTVNLDKLWSLVSEKTRTTYAEK 79
Query: 329 PDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXIXDVGGACVLSA 493
D K PVI++VKA PKQPVIV I VGGAC+L A
Sbjct: 80 KD-KAPVIDVVKAGYFKVLGKGLLPKQPVIVKAKFFSRTAEQKIKGVGGACILVA 133
>UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3;
Eukaryota|Rep: 60S ribosomal protein L27a - Tetrahymena
thermophila
Length = 149
Score = 134 bits (324), Expect = 1e-30
Identities = 71/150 (47%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Frame = +2
Query: 50 MATSKKKTRKLRGHVSXXXXXXXXXXXXX--XXXXNAGGEHHHRINMDKYHPGYFGKLGM 223
M + KKTRKLRGHVS AGG HHHRI M+K+HPGY+GKLGM
Sbjct: 1 MVSHLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGM 60
Query: 224 RNFHFXKNKNFCPVLNLXKLWTLVSEQTXLKYASAPDGKVPVINIVKAXXXXXXXXXXXP 403
R FH KN CPV+N+ KLW+LVS+ T KYA KVPVI++ KA P
Sbjct: 61 RTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAE-DKKKVPVIDVTKAGFFKVLGKGRLP 119
Query: 404 KQPVIVXXXXXXXXXXXXIXDVGGACVLSA 493
QPV+V I VGGACVL+A
Sbjct: 120 NQPVVVKAKYFSKTAERRIVAVGGACVLTA 149
>UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2;
Ostreococcus|Rep: 60s ribosomal protein L15/L27 -
Ostreococcus tauri
Length = 198
Score = 122 bits (293), Expect = 6e-27
Identities = 61/146 (41%), Positives = 76/146 (52%)
Frame = +2
Query: 56 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 235
T K RK RGHVS AGG+HHHRI MDKYHPGYFGK+GMR+FH
Sbjct: 54 TQLHKNRKKRGHVSAGHGRIGKHRKHPAGRGMAGGQHHHRIMMDKYHPGYFGKVGMRHFH 113
Query: 236 FXKNKNFCPVLNLXKLWTLVSEQTXLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPV 415
KN+ CP +N+ KLWTLV + + A + PVI++ P QPV
Sbjct: 114 KLKNQTVCPTINIDKLWTLVGTEKREECAK-NTSQAPVIDLTDHGIFKLLGKGQLPNQPV 172
Query: 416 IVXXXXXXXXXXXXIXDVGGACVLSA 493
+V I +VGGAC+L+A
Sbjct: 173 VVKCRYISKLAEKKIKEVGGACILTA 198
>UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56;
Eukaryota|Rep: 60S ribosomal protein L27a-2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 146
Score = 120 bits (290), Expect = 1e-26
Identities = 65/149 (43%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Frame = +2
Query: 50 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 229
MAT+ KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 230 FHFXKNKNFCPVLNLXKLWTLVSEQTXLKYASAPDGKVPVINIVKAXXXXXXXXXXXPK- 406
FH +NK FCP++NL KLW+LV E +K S+ D VP+I++ + P+
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPED--VKAKSSKD-NVPLIDVTQHGFFKVLGKGHLPEN 117
Query: 407 QPVIVXXXXXXXXXXXXIXDVGGACVLSA 493
+P +V I + GGA VL+A
Sbjct: 118 KPFVVKAKLISKTAEKKIKEAGGAVVLTA 146
>UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L27a
- Encephalitozoon cuniculi
Length = 147
Score = 74.1 bits (174), Expect = 2e-12
Identities = 40/147 (27%), Positives = 66/147 (44%)
Frame = +2
Query: 50 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 229
M KKTRKLRGHVS AGG H + ++HP Y GK GMR
Sbjct: 1 MTDRVKKTRKLRGHVSHGYGRVGKHRKHSGGRGLAGGFSHMKTFFTRFHPDYHGKRGMRV 60
Query: 230 FHFXKNKNFCPVLNLXKLWTLVSEQTXLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 409
+H +N ++ ++ +LW ++ ++ + P+ KVPVI++ + ++
Sbjct: 61 YHRKENSDYARPISSARLWGMIPKEQRYDFLDNPE-KVPVIDVREFGYHVVVGGKLSLER 119
Query: 410 PVIVXXXXXXXXXXXXIXDVGGACVLS 490
P++V I VGG +++
Sbjct: 120 PIVVKARYFTPSAKEEITKVGGKWIIT 146
>UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3;
Eukaryota|Rep: 60S ribosomal protein L27A - Guillardia
theta (Cryptomonas phi)
Length = 144
Score = 68.9 bits (161), Expect = 6e-11
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 1/148 (0%)
Frame = +2
Query: 50 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 229
M T +++RK RGHVS N+GG+HHH+I +KYH +FGK GMR
Sbjct: 1 MPTDIRRSRKKRGHVSSGHGRVGKHRKHPGGRGNSGGQHHHKIFFEKYHKKHFGKTGMRY 60
Query: 230 FHFXKNKNFCPVLNLXKLWTLVSEQTXLKYASAPDG-KVPVINIVKAXXXXXXXXXXXPK 406
+ K NF +NL K+ + + L ++ D + +I + K +
Sbjct: 61 YRKLKQNNFNKSINLDKISDKLVKNMHLHTKNSSDSFDLSLIGMSKVLGRGRMV-----Q 115
Query: 407 QPVIVXXXXXXXXXXXXIXDVGGACVLS 490
+P ++ I GG C+L+
Sbjct: 116 KPFVIKANSFSKVAVKKIKKAGGYCILT 143
>UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 187
Score = 66.9 bits (156), Expect = 3e-10
Identities = 38/112 (33%), Positives = 52/112 (46%)
Frame = +2
Query: 158 GEHHHRINMDKYHPGYFGKLGMRNFHFXKNKNFCPVLNLXKLWTLVSEQTXLKYASAPDG 337
G ++ + YFGK+GMR+FH +N +F PV+NL KLWTLV + K +A
Sbjct: 77 GSQEMEVDREIGRDSYFGKVGMRHFHLTRNSSFRPVVNLDKLWTLVPAEQR-KGLTADST 135
Query: 338 KVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXIXDVGGACVLSA 493
+VPVI+ + A P P IV I + GG L A
Sbjct: 136 EVPVIDTLAAGYGKVLGKGRLPALPCIVKARWVSSLAEKKIKEAGGVVKLVA 187
Score = 52.4 bits (120), Expect = 6e-06
Identities = 25/50 (50%), Positives = 26/50 (52%)
Frame = +2
Query: 50 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHP 199
M T KTRK RGHVS AGG+HHHR NMDKYHP
Sbjct: 1 MPTHLSKTRKHRGHVSAGNGRVGKHRKHPGGRGLAGGQHHHRTNMDKYHP 50
>UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole
genome shotgun sequence; n=3; Vitis vinifera|Rep:
Chromosome chr12 scaffold_159, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 151
Score = 54.8 bits (126), Expect = 1e-06
Identities = 20/37 (54%), Positives = 30/37 (81%)
Frame = +2
Query: 185 DKYHPGYFGKLGMRNFHFXKNKNFCPVLNLXKLWTLV 295
DK+HPG FGK+GMR+FH + K CP++++ KLW++V
Sbjct: 28 DKHHPGNFGKVGMRHFHKLRIKLHCPIVHIDKLWSMV 64
>UniRef50_Q3LW97 Cluster: Ribosomal protein L27a; n=1; Bigelowiella
natans|Rep: Ribosomal protein L27a - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 151
Score = 50.4 bits (115), Expect = 2e-05
Identities = 24/68 (35%), Positives = 33/68 (48%)
Frame = +2
Query: 50 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 229
M T KK+RK+RG S +GG+HHH+I ++Y YF K GMR
Sbjct: 1 MVTKLKKSRKMRGKNSSGHGRINKHRKNPGGKGKSGGQHHHKIIFERYRETYFRKTGMRI 60
Query: 230 FHFXKNKN 253
++ K N
Sbjct: 61 YNLEKTLN 68
>UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102C;
n=2; Saccharomycetaceae|Rep: Putative uncharacterized
protein YGL102C - Saccharomyces cerevisiae (Baker's
yeast)
Length = 142
Score = 47.6 bits (108), Expect = 2e-04
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = -1
Query: 379 LVVSSFDNIDDGDLAIWSRC-ILQXRLFRD*CPKLX*VQNWTEILVLXKVEISHTKFAKV 203
L V+ ++++ + SR +L +F D CP+ VQ+W + L VE+SHT ++
Sbjct: 42 LTVTGCQSVNNWSSFLRSRFQVLVSLVFWDQCPQFVQVQDWLPEMSLLLVEVSHTNLTEI 101
Query: 202 SRMVLVHVDXXXXXXXXXXXXXXXXXVLSDTTMS 101
+ MV +HV+ VL+DTT +
Sbjct: 102 TWMVFIHVNSVVMLTTGHTSTTGVLSVLTDTTFT 135
>UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1;
n=1; Arabidopsis thaliana|Rep: Putative 60S ribosomal
protein L27a-1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 104
Score = 44.0 bits (99), Expect = 0.002
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +2
Query: 50 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGK--LGM 223
M TS+KKTR LR HVS H R + PG G +GM
Sbjct: 1 MTTSRKKTRNLREHVSVG---------------------HGRFGKHRKLPGSRGNAGVGM 39
Query: 224 RNFHFXKNKNFCPVLNLXKLWTLV 295
R FH +NK +C ++NL KLW++V
Sbjct: 40 RYFHKLRNKFYCQIVNLDKLWSMV 63
>UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S ribosomal
protein L27a; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to 60S ribosomal protein L27a - Rattus
norvegicus
Length = 86
Score = 39.9 bits (89), Expect = 0.034
Identities = 21/51 (41%), Positives = 24/51 (47%)
Frame = +2
Query: 50 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPG 202
M+ +KTRK +GHVS NAGGEH HRIN PG
Sbjct: 1 MSGRLRKTRKFQGHVSDSHSRISKHHKHRGGQRNAGGEHLHRINCYYKVPG 51
>UniRef50_Q9ZQM0 Cluster: Putative non-LTR retroelement reverse
transcriptase; n=1; Arabidopsis thaliana|Rep: Putative
non-LTR retroelement reverse transcriptase - Arabidopsis
thaliana (Mouse-ear cress)
Length = 1044
Score = 34.3 bits (75), Expect = 1.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 184 GQVPSWILWQTWYEKFPLXKEQEFLSSFEL 273
GQ+P WILW W + L EQ+ +SS +L
Sbjct: 842 GQLPIWILWNLWNCRNKLIFEQKHISSMDL 871
>UniRef50_Q6LXD1 Cluster: 50S ribosomal protein L15P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L15P -
Methanococcus maripaludis
Length = 143
Score = 34.3 bits (75), Expect = 1.7
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 149 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFXKNKNFCPVLNLXKLWTLVSEQTXLKYASA 328
NAG + H +++ K++P YFGK G N+N C + L + E+ LKY A
Sbjct: 36 NAGHQKHKWLSVCKFNPDYFGKYGF-------NRNPCLIKQLETINIGELEEYILKYKDA 88
Query: 329 ---PDGKVPV 349
+GKV V
Sbjct: 89 FQVEEGKVVV 98
>UniRef50_A7RPS0 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 306
Score = 31.9 bits (69), Expect = 8.9
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 257 RNSCSX*SGNFSYQVCQSIQDGTCPC*FCDGAHHQHYHDLLDAYGA 120
R+SC + F +C+S T PC D H +H DL+D GA
Sbjct: 108 RSSCQ--ARCFMNNLCRSYNYNTTPCQLSDSDHLEHPSDLVDKPGA 151
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 458,686,432
Number of Sequences: 1657284
Number of extensions: 8076926
Number of successful extensions: 17423
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17406
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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