Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B08
         (517 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    26   0.23 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   3.7  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   6.5  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.6  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   8.6  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 25.8 bits (54), Expect = 0.23
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +2

Query: 194 HPGYFGKLGMRNFHFXKNKNFCPVLNLXKLWTLVSEQTXLKYASAPDGKVPVIN 355
           HP YFGK G +     K   +C  + L  L   V     + YAS  +   PV N
Sbjct: 303 HPTYFGKTGRKT--VLKTNKYCNFIILFYLSVFV---ILVYYASLDETPNPVTN 351


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -3

Query: 308 SSVQRLMSKAYXSSKLDRN 252
           S +++ +++AY + K+DRN
Sbjct: 88  SQIKKNVTRAYCNKKIDRN 106


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -3

Query: 308 SSVQRLMSKAYXSSKLDRN 252
           S +++ +++AY + K+DRN
Sbjct: 88  SQIKKNVTRAYCNKKIDRN 106


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 346 RHQYCQSWILQVARQRQTPQT 408
           RH   ++W+    R + TPQ+
Sbjct: 237 RHLERKAWVASFGRPKMTPQS 257


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 265 NWTEILVLXKVEISHTKF 212
           +WTEI     V  S TKF
Sbjct: 60  SWTEINAFANVSPSKTKF 77


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 417 MTGCLGSLPLPSNL*YPALTILMTGTL 337
           MTG    +P  S + Y    ILM GT+
Sbjct: 271 MTGTKTVMPSQSAIKYRKQVILMLGTV 297


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 147 PRPPGCLRCFPIRP 106
           P P G L  +P RP
Sbjct: 65  PSPRGALGAYPFRP 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,083
Number of Sequences: 336
Number of extensions: 2137
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)