Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B08
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...   107   7e-25
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...   105   5e-24
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   8.9  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =  107 bits (258), Expect = 7e-25
 Identities = 58/148 (39%), Positives = 69/148 (46%)
 Frame = +2

Query: 50  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 229
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 230 FHFXKNKNFCPVLNLXKLWTLVSEQTXLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 409
           FH  KN  + P +NL +LWTLV  +T  KY        PVIN++++           P  
Sbjct: 61  FHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDT 120

Query: 410 PVIVXXXXXXXXXXXXIXDVGGACVLSA 493
           PVI+            I   GG   L A
Sbjct: 121 PVIIQTRYVSRRAEEKIKQAGGVVELIA 148


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score =  105 bits (251), Expect = 5e-24
 Identities = 57/148 (38%), Positives = 69/148 (46%)
 Frame = +2

Query: 50  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 229
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 230 FHFXKNKNFCPVLNLXKLWTLVSEQTXLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 409
           FH  KN  + P +NL +LWTL+  +   KY        PVIN++++           P+ 
Sbjct: 61  FHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPET 120

Query: 410 PVIVXXXXXXXXXXXXIXDVGGACVLSA 493
           PVIV            I   GG   L A
Sbjct: 121 PVIVQTRYVSRRAEEKIKQAGGVVELIA 148


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 269 NLXKLWTLVSEQTXLKYASAPDGKVP 346
           NL K W  +S     K++  P+G +P
Sbjct: 323 NLKKQWASISPNITYKHSYNPNGTIP 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,438
Number of Sequences: 5004
Number of extensions: 34344
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)