Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B08
         (517 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66358-1|AAC47472.1|  149|Drosophila melanogaster RpL27a protein.     128   3e-30
U66357-1|AAC47475.1|  149|Drosophila melanogaster ribosomal prot...   128   3e-30
AY071144-1|AAL48766.1|  149|Drosophila melanogaster RE17991p pro...   128   3e-30
AE014134-746|AAF51006.3|  149|Drosophila melanogaster CG15442-PA...   128   3e-30
X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal prot...   128   6e-30
AE014298-625|AAX52475.1| 1095|Drosophila melanogaster CG3620-PD,...    28   8.6  
AE014298-624|AAX52474.1| 1095|Drosophila melanogaster CG3620-PC,...    28   8.6  

>U66358-1|AAC47472.1|  149|Drosophila melanogaster RpL27a protein.
          Length = 149

 Score =  128 bits (310), Expect = 3e-30
 Identities = 64/144 (44%), Positives = 75/144 (52%)
 Frame = +2

Query: 62  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFX 241
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH  
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 242 KNKNFCPVLNLXKLWTLVSEQTXLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIV 421
           +   F P +NL KLW+LV  +   +       K PVI++VK            P +PVIV
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125

Query: 422 XXXXXXXXXXXXIXDVGGACVLSA 493
                       I   GG C+LSA
Sbjct: 126 KAKYFSKKAEDKIKKAGGVCLLSA 149


>U66357-1|AAC47475.1|  149|Drosophila melanogaster ribosomal protein
           RpL27a protein.
          Length = 149

 Score =  128 bits (310), Expect = 3e-30
 Identities = 64/144 (44%), Positives = 75/144 (52%)
 Frame = +2

Query: 62  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFX 241
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH  
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 242 KNKNFCPVLNLXKLWTLVSEQTXLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIV 421
           +   F P +NL KLW+LV  +   +       K PVI++VK            P +PVIV
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125

Query: 422 XXXXXXXXXXXXIXDVGGACVLSA 493
                       I   GG C+LSA
Sbjct: 126 KAKYFSKKAEDKIKKAGGVCLLSA 149


>AY071144-1|AAL48766.1|  149|Drosophila melanogaster RE17991p
           protein.
          Length = 149

 Score =  128 bits (310), Expect = 3e-30
 Identities = 64/144 (44%), Positives = 75/144 (52%)
 Frame = +2

Query: 62  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFX 241
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH  
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 242 KNKNFCPVLNLXKLWTLVSEQTXLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIV 421
           +   F P +NL KLW+LV  +   +       K PVI++VK            P +PVIV
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125

Query: 422 XXXXXXXXXXXXIXDVGGACVLSA 493
                       I   GG C+LSA
Sbjct: 126 KAKYFSKKAEDKIKKAGGVCLLSA 149


>AE014134-746|AAF51006.3|  149|Drosophila melanogaster CG15442-PA
           protein.
          Length = 149

 Score =  128 bits (310), Expect = 3e-30
 Identities = 64/144 (44%), Positives = 75/144 (52%)
 Frame = +2

Query: 62  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFX 241
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH  
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 242 KNKNFCPVLNLXKLWTLVSEQTXLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIV 421
           +   F P +NL KLW+LV  +   +       K PVI++VK            P +PVIV
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125

Query: 422 XXXXXXXXXXXXIXDVGGACVLSA 493
                       I   GG C+LSA
Sbjct: 126 KAKYFSKKAEDKIKKAGGVCLLSA 149


>X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal protein
           L27a protein.
          Length = 149

 Score =  128 bits (308), Expect = 6e-30
 Identities = 63/144 (43%), Positives = 75/144 (52%)
 Frame = +2

Query: 62  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFX 241
           +KKTRKLRGHVS                 N GG HHHRIN DKYHPGYFGK+GMRNFH  
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNLGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 242 KNKNFCPVLNLXKLWTLVSEQTXLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIV 421
           +   F P +NL KLW+LV  +   +       K PVI++VK            P +PVIV
Sbjct: 66  RQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125

Query: 422 XXXXXXXXXXXXIXDVGGACVLSA 493
                       I + GG C+LSA
Sbjct: 126 KAKYFSKKAEDKIKEAGGVCLLSA 149


>AE014298-625|AAX52475.1| 1095|Drosophila melanogaster CG3620-PD,
           isoform D protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 218 GMRNF-HFXKNKNFCPVLNLXKLWTLVSEQTXLKYASAPDGKVPVINIVK 364
           G+R   H  K  N CP++ L K W        L Y     GK+PV  + K
Sbjct: 134 GIRKITHNVKANNICPMMCLRKHW------MRLSYCVEKSGKIPVKTLAK 177


>AE014298-624|AAX52474.1| 1095|Drosophila melanogaster CG3620-PC,
           isoform C protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 218 GMRNF-HFXKNKNFCPVLNLXKLWTLVSEQTXLKYASAPDGKVPVINIVK 364
           G+R   H  K  N CP++ L K W        L Y     GK+PV  + K
Sbjct: 134 GIRKITHNVKANNICPMMCLRKHW------MRLSYCVEKSGKIPVKTLAK 177


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,984,588
Number of Sequences: 53049
Number of extensions: 407230
Number of successful extensions: 1374
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1887744768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)