Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B08
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...   130   6e-31
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    60   7e-10
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AF067219-10|AAC17031.1|  753|Caenorhabditis elegans Hypothetical...    28   4.6  
AF003133-2|AAB54136.1|  753|Caenorhabditis elegans Hypothetical ...    28   4.6  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score =  130 bits (314), Expect = 6e-31
 Identities = 66/148 (44%), Positives = 82/148 (55%)
 Frame = +2

Query: 50  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 229
           MA + +KTRKLRGHVS                 NAGG+HHHRIN DKYHPGYFGK+GMR 
Sbjct: 1   MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 230 FHFXKNKNFCPVLNLXKLWTLVSEQTXLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 409
           FH  KN+++CP +N+ +LW+LV ++   K   A  GK PVI+  K            P+ 
Sbjct: 61  FHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPET 117

Query: 410 PVIVXXXXXXXXXXXXIXDVGGACVLSA 493
           P+IV            I   GGACVL A
Sbjct: 118 PLIVKARFFSHEAEQKIKKAGGACVLVA 145


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 60.5 bits (140), Expect = 7e-10
 Identities = 33/91 (36%), Positives = 45/91 (49%)
 Frame = +2

Query: 221 MRNFHFXKNKNFCPVLNLXKLWTLVSEQTXLKYASAPDGKVPVINIVKAXXXXXXXXXXX 400
           MR FH  KN+++CP +N+ +LW+LV ++   K   A  GK PVI+  K            
Sbjct: 1   MRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLL 57

Query: 401 PKQPVIVXXXXXXXXXXXXIXDVGGACVLSA 493
           P+ P+IV            I   GGACVL A
Sbjct: 58  PETPLIVKARFFSHEAEQKIKKAGGACVLVA 88


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 156 PALPRPPGCLRCFPIRPCP 100
           PA P+ P C  C P +PCP
Sbjct: 50  PACPQAPSCPVCPPPQPCP 68


>AF067219-10|AAC17031.1|  753|Caenorhabditis elegans Hypothetical
           protein R12E2.10 protein.
          Length = 753

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 310 AEVCICSRWQGPRHQYCQSWILQVARQRQ 396
           AE+ ICS  +GP ++Y     +Q  RQR+
Sbjct: 613 AEIAICSLLRGPTYKYPVQRAVQFLRQRR 641


>AF003133-2|AAB54136.1|  753|Caenorhabditis elegans Hypothetical
           protein T21E3.1 protein.
          Length = 753

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 310 AEVCICSRWQGPRHQYCQSWILQVARQRQ 396
           AE+ ICS  +GP ++Y     +Q  RQR+
Sbjct: 613 AEIAICSLLRGPTYKYPVQRAVQFLRQRR 641


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,745,116
Number of Sequences: 27780
Number of extensions: 203678
Number of successful extensions: 470
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)