Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B08
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   3.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.3  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   7.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   7.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   7.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   7.5  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   7.5  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   7.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   7.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   7.5  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 293 VSEQTXLKYASAPDGKVPVI 352
           V EQT      A D KVP+I
Sbjct: 230 VKEQTLQSIEMAKDAKVPII 249


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 346 RHQYCQSWILQVARQRQTPQT 408
           RH   ++W+    R + TPQ+
Sbjct: 241 RHLERKAWVASFGRPKMTPQS 261


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 301 TDXAEVCICSRWQGPRHQYCQSWILQVARQRQ 396
           ++ +E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 301 TDXAEVCICSRWQGPRHQYCQSWILQVARQRQ 396
           ++ +E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 301 TDXAEVCICSRWQGPRHQYCQSWILQVARQRQ 396
           ++ +E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 301 TDXAEVCICSRWQGPRHQYCQSWILQVARQRQ 396
           ++ +E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 301 TDXAEVCICSRWQGPRHQYCQSWILQVARQRQ 396
           ++ +E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 301 TDXAEVCICSRWQGPRHQYCQSWILQVARQRQ 396
           ++ +E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 301 TDXAEVCICSRWQGPRHQYCQSWILQVARQRQ 396
           ++ +E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 301 TDXAEVCICSRWQGPRHQYCQSWILQVARQRQ 396
           ++ +E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,078
Number of Sequences: 438
Number of extensions: 2529
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)