Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B07
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    80   1e-16
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    24   6.3  
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    24   8.3  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    24   8.3  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 79.8 bits (188), Expect = 1e-16
 Identities = 33/52 (63%), Positives = 38/52 (73%)
 Frame = +2

Query: 86  MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXXYAHDIXF 241
           M H N+W+SHPR+YG+GSR C     R GLIRKYGLNI RQ F  YA+DI F
Sbjct: 1   MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGF 52


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 103 LVFSPSQIRTRISVMPI 153
           LV+ PSQIR R+S++ +
Sbjct: 26  LVYRPSQIRRRVSLLSL 42


>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 147 HDRDPCPYL 121
           H RDPCPY+
Sbjct: 6   HTRDPCPYV 14


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 128 GQGSRSCRSCSNRHGLIRKYGLNICRQC 211
           G GS    +  N+ G +  +GLNI RQC
Sbjct: 285 GAGSYHSFAIDNK-GRVYAWGLNITRQC 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,114,519
Number of Sequences: 5004
Number of extensions: 19857
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)