Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_B07
(362 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0486 + 19577507-19577568,19578119-19578218,19581128-195812... 86 9e-18
11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338 86 9e-18
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 86 9e-18
06_02_0196 - 12898050-12898553,12898689-12900824 28 2.0
10_01_0345 - 3811057-3811236,3811342-3811615,3811732-3812289,381... 27 4.5
09_02_0557 + 10639845-10639900,10640372-10640647,10640998-10641283 27 4.5
07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324... 27 4.5
12_02_1151 + 26488686-26488792,26488897-26489142,26490246-264903... 27 6.0
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751... 27 6.0
>12_02_0486 +
19577507-19577568,19578119-19578218,19581128-19581214,
19581852-19581914
Length = 103
Score = 85.8 bits (203), Expect = 9e-18
Identities = 35/52 (67%), Positives = 38/52 (73%)
Frame = +2
Query: 86 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXXYAHDIXF 241
MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL CRQCF A DI F
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGF 52
>11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338
Length = 56
Score = 85.8 bits (203), Expect = 9e-18
Identities = 35/52 (67%), Positives = 38/52 (73%)
Frame = +2
Query: 86 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXXYAHDIXF 241
MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL CRQCF A DI F
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGF 52
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 85.8 bits (203), Expect = 9e-18
Identities = 35/52 (67%), Positives = 38/52 (73%)
Frame = +2
Query: 86 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXXYAHDIXF 241
MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL CRQCF A DI F
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGF 52
>06_02_0196 - 12898050-12898553,12898689-12900824
Length = 879
Score = 28.3 bits (60), Expect = 2.0
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 155 RIGMTEILVRICEGENTKYLRGPF*EIKLFLAN--EQQIRYTFKMAE 21
R+GM L R+C+ L G +IK+ L N E++IRY K E
Sbjct: 101 RMGMAVALKRMCKMGTWSRLAGNLQDIKVNLKNAAERRIRYDLKGVE 147
>10_01_0345 -
3811057-3811236,3811342-3811615,3811732-3812289,
3812602-3812747,3812930-3813097,3813896-3814003,
3814859-3815029,3816557-3816949,3817522-3817617,
3817715-3817774,3818600-3818744,3819296-3819520,
3820106-3820254
Length = 890
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 112 RIPNICVAHFKKLNCFSLTSNKLDT 38
R+P I V H K+ + NKLDT
Sbjct: 759 RLPEILVVHLKRFSYSRFMKNKLDT 783
>09_02_0557 + 10639845-10639900,10640372-10640647,10640998-10641283
Length = 205
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 112 RIPNICVAHFKKLNCFSLTSNKLDT 38
R+P + V H K+ + T NKL+T
Sbjct: 130 RLPEVLVIHLKRFSYTQFTRNKLET 154
>07_01_0426 +
3239274-3239386,3239472-3239702,3242516-3242642,
3242729-3242788,3242868-3242960,3243073-3243369,
3243450-3243761,3243857-3244114,3244227-3244375,
3244470-3245102,3245367-3245640,3245736-3245777,
3246332-3246586,3246700-3246711
Length = 951
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 112 RIPNICVAHFKKLNCFSLTSNKLDT 38
R+P + V H K+ + T NKL+T
Sbjct: 777 RLPEVLVIHLKRFSYTQFTRNKLET 801
>12_02_1151 +
26488686-26488792,26488897-26489142,26490246-26490381,
26490502-26490561,26490648-26490740,26491421-26491663,
26491828-26491968,26492312-26492482,26492813-26492899,
26492954-26493211,26493300-26493445,26493535-26493922,
26493935-26494092,26494267-26494540,26494721-26494894
Length = 893
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 112 RIPNICVAHFKKLNCFSLTSNKLDT 38
R+P I + H K+ + T NKL+T
Sbjct: 764 RLPEILIIHLKRFSYSRYTKNKLET 788
>06_03_0635 - 22971502-22973840,22974112-22974403,22974639-22975162,
22975314-22975583,22976393-22977124,22977226-22977310
Length = 1413
Score = 26.6 bits (56), Expect = 6.0
Identities = 21/78 (26%), Positives = 31/78 (39%)
Frame = -2
Query: 274 LLFVXHLVQXXESYVMSILXEALSAYVQTVLAD*AMPVGAGSA*PRSLSVSARVRIPNIC 95
LL + H +Q + S L L ++V + VG G RSL PN
Sbjct: 1118 LLLLPHQLQNLDIRHCSKLILQLDSFVGDTTRNLIRGVGGGLQYLRSLQSLCIKHCPNFL 1177
Query: 94 VAHFKKLNCFSLTSNKLD 41
++ L+CF S+ D
Sbjct: 1178 SSYSPSLSCFPFPSSLQD 1195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,280,066
Number of Sequences: 37544
Number of extensions: 130711
Number of successful extensions: 292
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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