Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_B07
(362 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal prote... 89 7e-19
AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical ... 29 1.00
Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical pr... 28 1.7
AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear recep... 28 1.7
Z83109-6|CAB05522.1| 362|Caenorhabditis elegans Hypothetical pr... 27 5.3
AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical ... 27 5.3
AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical ... 27 5.3
U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily ass... 26 7.0
AF016445-6|AAC69053.1| 250|Caenorhabditis elegans Hypothetical ... 26 7.0
AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical... 26 9.3
AF016665-6|AAL02468.1| 655|Caenorhabditis elegans Hypothetical ... 26 9.3
>U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 29 protein.
Length = 56
Score = 89.4 bits (212), Expect = 7e-19
Identities = 35/56 (62%), Positives = 43/56 (76%)
Frame = +2
Query: 86 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXXYAHDIXFXXLD 253
MG N+W+SHPR++G GSRSCR C+ HGLIRKYGL++CR+CF A DI F LD
Sbjct: 1 MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56
>AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.9 protein.
Length = 250
Score = 29.1 bits (62), Expect = 1.00
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -2
Query: 169 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRNL 17
M A S PR+ + + N + +LNC S+T ++ ++P+ WR +
Sbjct: 93 MKTAAASTCPRTCGLCCQTEAYNCPNVAYPRLNCASITLSQCNSPA-WRTI 142
>Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical
protein C29E6.5 protein.
Length = 449
Score = 28.3 bits (60), Expect = 1.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 146 CRSCSNRHGLIRKYGLNICRQCFXXYAHDI 235
CR C R+ + +G++ICR C + +
Sbjct: 47 CRVCERRYDGSQHFGIDICRACAAFFRRSV 76
>AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear receptor
NHR-43 protein.
Length = 459
Score = 28.3 bits (60), Expect = 1.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 146 CRSCSNRHGLIRKYGLNICRQCFXXYAHDI 235
CR C R+ + +G++ICR C + +
Sbjct: 57 CRVCERRYDGSQHFGIDICRACAAFFRRSV 86
>Z83109-6|CAB05522.1| 362|Caenorhabditis elegans Hypothetical
protein F44G3.11 protein.
Length = 362
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 88 HFKKLNCFSLTSNKLDTPSRWRNL 17
+ ++ CFSL + D RWRN+
Sbjct: 200 NISEVACFSLVAYNFDNTPRWRNI 223
>AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical
protein R11E3.4 protein.
Length = 747
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 80 LKMGHANIWYSHPRRYGQGSR-SCRSCSNRHGLIRKY 187
LK A W+ +P+R G +R C SC ++R +
Sbjct: 482 LKKQLARPWFVNPKRIGNVARICCHSCQPNMAMVRVF 518
>AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical
protein C15F1.5a protein.
Length = 381
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 188 RTCGLSHACWSRIGMTEILVRICEGEN 108
R C ++H C+S + E + CEGEN
Sbjct: 40 RVCPVAH-CYSSLTAPEPMTSTCEGEN 65
>U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily
assigned gene nameprotein 293 protein.
Length = 385
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 91 AHFKKLNCFSLTSNKLDTPSRWRNL 17
A F +LNC ++T+N+ P+ WR +
Sbjct: 255 AQFPRLNCDTITNNQCKDPN-WRTI 278
>AF016445-6|AAC69053.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.10 protein.
Length = 250
Score = 26.2 bits (55), Expect = 7.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = -2
Query: 169 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRNL 17
M A S PR+ + + + + +LNC S+T ++ ++P+ WR +
Sbjct: 93 MKTAAASTCPRTCGLCCQTDAYSCPNVAYPRLNCASITLSQCNSPA-WRTI 142
>AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical
protein T15B7.16 protein.
Length = 435
Score = 25.8 bits (54), Expect = 9.3
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 145 MPILLQQAWLNPQVRFEHMQTVL 213
+ +L Q W +P++RF+H+ L
Sbjct: 80 LDLLFSQIWHDPRLRFDHLTNCL 102
>AF016665-6|AAL02468.1| 655|Caenorhabditis elegans Hypothetical
protein C49D10.10 protein.
Length = 655
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 82 KKLNCFSLTSNKLDTPSRWRNLNGKK 5
K+L C ++ D P RNLNG K
Sbjct: 525 KRLRCLLRQHDEYDDPDFGRNLNGSK 550
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,210,577
Number of Sequences: 27780
Number of extensions: 114416
Number of successful extensions: 291
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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