Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B06
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    28   0.84 
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   1.5  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    27   2.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   3.4  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    26   4.5  

>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 302 TRDYELARIGQGSAALIAYVRQLHLTARS-KPQDVVTTPTEQVKVLDSIFGEELVSSL 472
           T +  L +I  G  + ++Y+    +  R  KP +++ T   QVK+ D     ELV+SL
Sbjct: 178 TGERPLGKIAFGVLSGLSYLHDRKIIHRDIKPSNILLTSKGQVKLCDFGVSGELVNSL 235


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 173  PNELYRRLLPAMLFVLTFVTVMTMLLIYM 259
            P+  Y+RL+  +LF     T++T+LL+++
Sbjct: 954  PSNFYKRLIALLLFCWICSTLVTVLLVFV 982


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 350 IAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGE 454
           I+Y++ L      K  DV+TTPT+ V V++   GE
Sbjct: 83  ISYLKLLRHPHIIKLYDVITTPTDIVMVIEYAGGE 117


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 398  DVVTTPTEQVKVLDSIFGEELVSSLLPN 481
            D+    TE+  V   +FGE+ V  L+PN
Sbjct: 3018 DITDIITEEFAVEKDVFGEKTVVDLIPN 3045


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 504 FSHFVKYQLGKSELTNSSPKMESKTFTCSVGV 409
           + H+V Y L    L  S+P   SK F    G+
Sbjct: 810 YGHYVAYVLSHKFLDLSAPSTNSKDFRSEAGI 841


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,490
Number of Sequences: 5004
Number of extensions: 47251
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)