Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_B06
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0910 + 8858443-8859414 31 0.65
04_01_0515 + 6740112-6740757,6755297-6755570,6755595-6755871 31 0.65
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 31 0.86
03_05_0527 + 25220375-25221425,25221513-25222182,25222347-252224... 30 1.5
07_03_0323 - 16773826-16774569,16774976-16775211,16775337-16775646 29 2.0
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 29 2.6
04_04_0118 - 22889608-22890816,22891990-22892261,22892306-228931... 29 2.6
04_01_0243 - 3193065-3193436 29 2.6
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 29 3.5
07_03_1642 - 28319790-28321445 28 6.1
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 27 8.0
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 27 8.0
>12_01_0910 + 8858443-8859414
Length = 323
Score = 31.1 bits (67), Expect = 0.65
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 464 SPIPLQKWNPKPSPAL*VW 408
SP+PL W P PSPA+ W
Sbjct: 13 SPLPLPPWRPDPSPAVLPW 31
>04_01_0515 + 6740112-6740757,6755297-6755570,6755595-6755871
Length = 398
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 314 ELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELVSSLLPN*Y 487
E + QG+ + Y+ + + AR +P+DV T +Q K L + +EL + L+ Y
Sbjct: 113 EFRALHQGNRTVTEYLHEFNRLARYEPEDVRTDAEKQEKFLAGL-DDELTNQLISGDY 169
>07_03_1512 +
27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 30.7 bits (66), Expect = 0.86
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 314 ELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELVSSLL 475
E + QGS ++ Y+ + AR P+D+ T Q K L+ + +EL +L+
Sbjct: 454 EFRALNQGSRSVTEYLHDFNRLARYAPEDIRTDEERQEKFLEGL-NDELSYALM 506
>03_05_0527 +
25220375-25221425,25221513-25222182,25222347-25222440,
25222688-25222870
Length = 665
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 314 ELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELVSSLLPN*Y 487
E + QG+ + Y+ + + AR P+DV T +Q K L + +EL + L+ Y
Sbjct: 186 EFRALHQGNRMVTEYLHEFNRLARYTPEDVRTDAEKQEKFLAGL-DDELTNQLISGDY 242
>07_03_0323 - 16773826-16774569,16774976-16775211,16775337-16775646
Length = 429
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 332 QGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELVSSLLPN*Y 487
QGS + Y+ + + AR P+DV T Q K L+ + +EL L+ Y
Sbjct: 342 QGSRTVTEYLHEFNRLARYAPEDVRTDEERQEKFLEGL-NDELSYPLMAGDY 392
>10_05_0026 +
8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 314 ELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELVSSLLPN*Y 487
E + QGS ++ Y+ + + AR P+DV Q K L+ + +EL L+ Y
Sbjct: 351 EFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLEGL-NDELSYPLMTGEY 407
>04_04_0118 -
22889608-22890816,22891990-22892261,22892306-22893131,
22893311-22893534,22893620-22893936,22894035-22894294,
22894723-22894923,22895015-22895190,22895445-22895718
Length = 1252
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +2
Query: 302 TRDYELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELVSSLLPN 481
TR+Y IG G A++AY+ Q + S + +TT ++ + ++F + L S++L N
Sbjct: 717 TREYVFIYIGTGLYAVVAYLVQHYFF--SIMGENLTTRVRRMMLAVALFDQRLFSAILRN 774
>04_01_0243 - 3193065-3193436
Length = 123
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +2
Query: 314 ELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELVSSLLPN*Y 487
E + QG+ + Y+ + + AR P+D+ T +Q K + + +EL + L+ Y
Sbjct: 35 EFRALHQGNRTVTEYLHEFNRLARYAPEDIRTDAEKQEKFMAGL-DDELTNQLISGDY 91
>04_01_0293 +
3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 314 ELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELVSSLLPN*Y 487
E + QGS ++ Y+ + + AR P+DV Q K L+ + +EL L+ Y
Sbjct: 152 EFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNGEERQEKFLEGL-NDELSYPLMTGDY 208
>07_03_1642 - 28319790-28321445
Length = 551
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 252 IKSIVMTVTNVKTKSIAGSNRRYNSLGGAFINAGNVNRGLCVF 124
I + +K+K+++G Y+S+ A+ AGNV R VF
Sbjct: 229 ITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVF 271
>08_01_0441 +
3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 314 ELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELVSSLLPN*Y 487
E + QGS ++ Y+ + + AR P+DV Q K L + +EL L+ Y
Sbjct: 373 EFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLGGL-NDELSYPLMVGDY 429
>02_05_1011 + 33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 27.5 bits (58), Expect = 8.0
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +2
Query: 209 LFVLTFVTVMTMLLIYMDTVALGAQQFRLNMTRDYELARIGQGSAALIAYVRQLHLTARS 388
LF++T V MLLIY+ V ++ L + A G GS + +R+L AR
Sbjct: 830 LFLITGVVTSAMLLIYL-AVFFYRERDELR-AAEAAAAASGSGSGSGSRSLRRLRAWARH 887
Query: 389 KPQDVVTTPTEQVKVLDSIF--GEELVSSLLP 478
Q + +PT + + D G E +S P
Sbjct: 888 YDQKDLKSPTFKRRWSDESVRNGSEYAASRTP 919
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,131,200
Number of Sequences: 37544
Number of extensions: 316184
Number of successful extensions: 733
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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