Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_B06
(572 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22059| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_59080| Best HMM Match : RVT_1 (HMM E-Value=1.2e-35) 27 8.2
SB_41718| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34) 27 8.2
SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_37650| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_19821| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_13918| Best HMM Match : RVT_1 (HMM E-Value=5.2e-07) 27 8.2
SB_51607| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_6922| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34) 27 8.2
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0) 27 8.2
>SB_22059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +2
Query: 95 DKLVIIFAETKTHSPRFTLPAFMKAPPNELYR-RLLPAMLFV---LTFVTVMTMLLIYMD 262
D L++I A T RF L + PP++ + R A +FV + FV T++ +Y+
Sbjct: 149 DVLLVIMAVAVT---RFLLRGQINPPPSQQQQWRFQDAKMFVGIIVLFVVPYTLISVYLI 205
Query: 263 TVALGAQQFRLNMT 304
A+G QF ++
Sbjct: 206 LDAIGVVQFHFTVS 219
>SB_59080| Best HMM Match : RVT_1 (HMM E-Value=1.2e-35)
Length = 318
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 323 RIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEEL 460
R G+G+ +I RQ+ + + QD+ TT + K D++ E L
Sbjct: 67 RAGRGTVDMIFAARQIQEKSVEQNQDLYTTFVDLTKAFDTVSREGL 112
>SB_41718| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34)
Length = 470
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 323 RIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEEL 460
R G+G+ +I RQ+ + + QD+ TT + K D++ E L
Sbjct: 126 RAGRGTVDMIFAARQIQEKSVEQNQDLYTTFVDLTKAFDTVSREGL 171
>SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1810
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 317 LARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVK 430
LAR+ Q A Q+H+ RSKP V+ P + ++
Sbjct: 1743 LARVDQAKAKRYESQPQVHVKQRSKPVKQVSKPAKPIR 1780
>SB_37650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 323 RIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEEL 460
R G+G+ +I RQ+ + + QD+ TT + K D++ E L
Sbjct: 112 RAGRGTVDMIFAARQIQEKSVEQNQDLYTTFVDLTKAFDTVSREGL 157
>SB_19821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 323 RIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEEL 460
R G+G+ +I RQ+ + + QD+ TT + K D++ E L
Sbjct: 61 RAGRGTVDMIFAARQIQEKSVEQNQDLYTTFVDLTKAFDTVSREGL 106
>SB_13918| Best HMM Match : RVT_1 (HMM E-Value=5.2e-07)
Length = 278
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 323 RIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEEL 460
R G+G+ +I RQ+ + + QD+ TT + K D++ E L
Sbjct: 27 RAGRGTVDMIFAARQIQEKSVEQNQDLYTTFVDLTKAFDTVSREGL 72
>SB_51607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 323 RIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEEL 460
R G+G+ +I RQ+ + + QD+ TT + K D++ E L
Sbjct: 8 RAGRGTVDMIFAARQIQEKSVEQNQDLYTTFVDLTKAFDTVSREGL 53
>SB_6922| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34)
Length = 425
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 323 RIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEEL 460
R G+G+ +I RQ+ + + QD+ TT + K D++ E L
Sbjct: 67 RAGRGTVDMIFAARQIQEKSVEQNQDLYTTFVDLTKAFDTVSREGL 112
>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1705
Score = 27.5 bits (58), Expect = 8.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -2
Query: 271 CNCVHVN*EHRHDSHKCQNEEHC 203
CN + ++ H H +H CQ++ +C
Sbjct: 187 CNSLALSSNHSHYAHNCQSDANC 209
Score = 27.5 bits (58), Expect = 8.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -2
Query: 271 CNCVHVN*EHRHDSHKCQNEEHC 203
CN + ++ H H +H CQ++ +C
Sbjct: 627 CNSLALSSNHSHYAHNCQSDANC 649
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,619,857
Number of Sequences: 59808
Number of extensions: 368466
Number of successful extensions: 859
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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