Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B06
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-9|AAD14749.2|  523|Caenorhabditis elegans Glutamate tra...    29   3.1  
Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical p...    27   9.5  
AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF125964-9|AAD14749.2|  523|Caenorhabditis elegans Glutamate
           transporter family protein7 protein.
          Length = 523

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
 Frame = +2

Query: 173 PNELYRRLLPAMLFVLTFVTVMTMLLIYMDTVALGAQQFRLNMTRDYELARIGQGSAALI 352
           P E++ ++L  M+  L F ++++ L   MD    G   F   +   Y L  +   S   +
Sbjct: 45  PGEIFMQVLKLMVLPLIFSSLISSLG-QMDASRSGKMSF---IAIAYYLTTVIIASCIGV 100

Query: 353 AYVRQLHL---TARS-KPQDVVTTPTEQVKVLDSIFGEELVSSLLP 478
           A V   H      RS +P+DVV      +  LDSI   +L+ ++ P
Sbjct: 101 AMVFLFHPGDPDMRSHRPEDVVIREDNNISALDSIL--DLIRNMFP 144


>Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical
           protein T09E11.4 protein.
          Length = 671

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 320 ARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEE 457
           ARI Q    ++ Y+RQ H   RS    + T   E  KVL+++ GEE
Sbjct: 198 ARIWQFLIGMVVYIRQRH---RS---SIPTDEPESGKVLENVDGEE 237


>AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2a protein.
          Length = 686

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 317 LARIGQGSAALIAYVRQLHLTARSKPQDVVTT--PTEQVKVLDSIFG 451
           L ++G+G+ A   Y+R+     RS  +DV  +  P   VK L +++G
Sbjct: 382 LTQLGRGTYATDVYLRRRSAMQRSAMRDVTVSEEPISYVKQLCTLYG 428


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,072,725
Number of Sequences: 27780
Number of extensions: 278496
Number of successful extensions: 715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)