Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_B05
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 100 2e-22
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 75 7e-15
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 63 4e-11
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 60 4e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 58 8e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 54 2e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 54 2e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 53 4e-08
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 53 4e-08
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 52 7e-08
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 51 2e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 49 5e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 49 7e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 48 1e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 46 6e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 44 2e-05
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 42 1e-04
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 41 1e-04
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 40 2e-04
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 40 4e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 38 0.002
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 38 0.002
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 30 0.33
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.33
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.33
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 29 0.44
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 25 7.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 9.4
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 100 bits (240), Expect = 2e-22
Identities = 49/75 (65%), Positives = 60/75 (80%)
Frame = +1
Query: 424 QKFTALEGTVCEPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIP 603
+KF+ L+ + E IK+MGF TMTEIQ ++IPPLL GRD++GAAKTGSGKTLAFLIP
Sbjct: 89 EKFSDLQ--LSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIP 146
Query: 604 AIXLIYKLKFKPRNG 648
I ++Y LKFKPRNG
Sbjct: 147 TIEMLYALKFKPRNG 161
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 75.4 bits (177), Expect = 7e-15
Identities = 33/64 (51%), Positives = 48/64 (75%)
Frame = +1
Query: 457 EPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIXLIYKLKFK 636
+PT +K+ F+T+TEIQ + IP L+GRD++GAAKTGSGKTLAF++P I +Y+ K+
Sbjct: 48 QPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWT 107
Query: 637 PRNG 648
+G
Sbjct: 108 SLDG 111
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 62.9 bits (146), Expect = 4e-11
Identities = 31/61 (50%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Frame = +1
Query: 460 PTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI-XLIYKLKFK 636
P L G+ ++GF T+IQ K IP L G+D+VGAA TGSGKT AF++P + L+Y+ K
Sbjct: 269 PILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKV 328
Query: 637 P 639
P
Sbjct: 329 P 329
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 59.7 bits (138), Expect = 4e-10
Identities = 26/47 (55%), Positives = 35/47 (74%)
Frame = +1
Query: 463 TLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIP 603
T+ I +G+ T IQA+AIP + GRD++G AKTGSGKT+AFL+P
Sbjct: 429 TISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLP 475
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 58.4 bits (135), Expect = 8e-10
Identities = 30/48 (62%), Positives = 33/48 (68%)
Frame = +1
Query: 466 LLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
L I GF T IQ K IP LLEGRD+VG A+TGSGKT AF+IP I
Sbjct: 81 LRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMI 128
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 54.0 bits (124), Expect = 2e-08
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = +1
Query: 490 FVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIXLIYKLK 630
F T +Q++ IP LEG+DLV A+TGSGKT A+LIP + L+ K K
Sbjct: 34 FEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQK 80
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 54.0 bits (124), Expect = 2e-08
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +1
Query: 475 IKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIXLIYKL 627
+K + + + IQ AIP LL+ +DL+G A+TGSGKT AF+IP I I KL
Sbjct: 264 LKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKL 314
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +1
Query: 484 MGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
+GF T T IQ +AIP +L RD++G A+TGSGKT AF +P I
Sbjct: 64 LGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI 105
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 52.8 bits (121), Expect = 4e-08
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +1
Query: 475 IKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
+K +GF T IQ +A P + GRD+VG + TGSGKTL++ +PAI
Sbjct: 137 VKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAI 181
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 52.0 bits (119), Expect = 7e-08
Identities = 25/57 (43%), Positives = 37/57 (64%)
Frame = +1
Query: 466 LLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIXLIYKLKFK 636
L+GI + GF + IQ ++IP L GRD++ AK G+GKT AF+IP++ + K K
Sbjct: 56 LMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSK 112
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +1
Query: 487 GFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIP 603
GF MT +QA AIP L+ +DLV A TGSGKTLA+L+P
Sbjct: 20 GFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLP 58
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 49.2 bits (112), Expect = 5e-07
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +1
Query: 466 LLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIXLIY 621
L IK G+ T +Q +IP + GRDL+ A+TGSGKT FL P + L +
Sbjct: 181 LQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAF 232
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 48.8 bits (111), Expect = 7e-07
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = +1
Query: 502 TEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
T IQA P LL GRD+VG A+TGSGKT+AF IPA+
Sbjct: 189 TPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPAL 224
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 48.0 bits (109), Expect = 1e-06
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = +1
Query: 475 IKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
+K + T+IQ I +LEGR+ +G AKTGSGKT AF +P I
Sbjct: 22 LKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 45.6 bits (103), Expect = 6e-06
Identities = 24/56 (42%), Positives = 31/56 (55%)
Frame = +1
Query: 442 EGTVCEPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
EG +CE +K T IQ AIP + RDL+ A TGSGKT+A+L P +
Sbjct: 54 EGILCE----NLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPIL 105
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 460 PTLLG-IKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
P +LG + GF IQ+ IP G D++G A TGSGKTLAF IP +
Sbjct: 131 PEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPIL 181
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +1
Query: 457 EPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLI 600
E L GI G+ T + +Q++AI + +GRD++ A++G+GKT F I
Sbjct: 30 EDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSI 77
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 41.1 bits (92), Expect = 1e-04
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 421 DQKFTALEGTVCEPTLL-GIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFL 597
D+ + +P LL GI GF + IQ +AI P+L RD++ A++G+GKT F
Sbjct: 15 DEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFS 74
Query: 598 IPAIXLI 618
I + I
Sbjct: 75 ISVLQKI 81
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 40.3 bits (90), Expect = 2e-04
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Frame = +1
Query: 412 ILSDQKFTALEGTVCEPTLL-GIKDMGFVTMTEIQAKAIPPLLEG--RDLVGAAKTGSGK 582
+ S + F LE +P LL GI M F ++IQ KA+P LL R+++G +++G+GK
Sbjct: 110 LFSVKSFEELE---LKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGK 166
Query: 583 TLAFLIPAIXLIYKLKFKPR 642
T AF + + + KP+
Sbjct: 167 TAAFALTMLSRVDASVPKPQ 186
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.5 bits (88), Expect = 4e-04
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 433 TALEGTVCEPTLL-GIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
T + +P LL I D GF +E+Q IP + G D++ AK+G GKT F++ +
Sbjct: 51 TGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTL 110
Query: 610 XLI 618
I
Sbjct: 111 QQI 113
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 487 GFVTMTEIQAKAIPPLLEGRD-LVGAAKTGSGKTLAFLIPAIXLIYKLKFKPR 642
GF MT +Q + + + + V AKTG+GKTLAFL+ A + LK KPR
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDV--LKGKPR 107
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +1
Query: 484 MGFVTMTEIQAKAIPPLL--EGRDLVGAAKTGSGKTLAFLIPAIXLIYKL 627
M T IQ+ +P LL + +D A+TGSGKTLA+L+P + + +L
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRL 206
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 29.9 bits (64), Expect = 0.33
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 541 GRDLVGAAKTGSGKTLAFLIPAI 609
G D+ +A TGSGKTL+++IP +
Sbjct: 173 GGDVCVSAATGSGKTLSYVIPIV 195
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 532 LLEGRDLVGAAKTGSGKTLAFLIPAI 609
LL +L+ TG GK+L+FLIPA+
Sbjct: 1203 LLNRMNLITVLPTGGGKSLSFLIPAL 1228
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 532 LLEGRDLVGAAKTGSGKTLAFLIPAI 609
LL +L+ TG GK+L+FLIPA+
Sbjct: 1203 LLNRMNLITVLPTGGGKSLSFLIPAL 1228
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 29.5 bits (63), Expect = 0.44
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 511 QAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
Q +AI L G+D+ TG GK+L + +PA+
Sbjct: 524 QLEAINGTLSGKDVFILMPTGGGKSLCYQLPAV 556
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 157 EPXKDIEALNNEKEAKKRVVQDGDTNG 237
E + I ALNNEK +K+ +++ G+ G
Sbjct: 657 ETGRFINALNNEKWSKQVILRKGEVYG 683
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 533 CWKAGILWELPKL 571
CWKA I W++P L
Sbjct: 742 CWKANIPWKVPGL 754
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,213
Number of Sequences: 5004
Number of extensions: 30590
Number of successful extensions: 93
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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