Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_B05
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 112 3e-25
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 73 2e-13
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 57 1e-08
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 51 9e-07
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 50 1e-06
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 50 2e-06
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 50 2e-06
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 48 7e-06
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 45 6e-05
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 44 1e-04
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 43 2e-04
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 41 8e-04
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 40 0.001
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 38 0.007
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 38 0.009
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 37 0.016
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 37 0.016
SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19) 36 0.038
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 31 0.61
SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6) 31 0.81
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32) 30 1.9
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 29 2.5
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55) 29 4.3
SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3) 28 5.7
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 112 bits (269), Expect = 3e-25
Identities = 53/74 (71%), Positives = 62/74 (83%)
Frame = +1
Query: 427 KFTALEGTVCEPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPA 606
+F+AL V E TL GIKDMGF TMTEIQ K+I PLL+GRDL+GAAKTGSGKTLAFL+P
Sbjct: 571 EFSALSEDVSEKTLQGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPV 630
Query: 607 IXLIYKLKFKPRNG 648
+ L+YKL+FK RNG
Sbjct: 631 VELLYKLQFKTRNG 644
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 72.9 bits (171), Expect = 2e-13
Identities = 35/66 (53%), Positives = 47/66 (71%)
Frame = +1
Query: 451 VCEPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIXLIYKLK 630
+ + TL G+ GFVT T+IQ + IP L GRD++GAAKTGSGKTLAFLIP I +++ K
Sbjct: 57 ISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPIIETLWRQK 116
Query: 631 FKPRNG 648
+ +G
Sbjct: 117 WTSMDG 122
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/42 (57%), Positives = 30/42 (71%)
Frame = +1
Query: 484 MGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
MG TEIQ +PP+L+GRD +G AKTGSGKT AF +P +
Sbjct: 25 MGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPIL 66
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 56.4 bits (130), Expect = 2e-08
Identities = 34/65 (52%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Frame = +1
Query: 442 EGTVCEPTLL-GIKDMGFVTMTEIQAKAIPP-LLEGRDLVGAAKTGSGKTLAFLIPAIXL 615
EG P +L + D GF T IQ+ +IPP LL RD++GAA+TGSGKTLAF IP I
Sbjct: 133 EGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQH 192
Query: 616 IYKLK 630
I K
Sbjct: 193 IEAYK 197
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/51 (49%), Positives = 35/51 (68%)
Frame = +1
Query: 457 EPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
E + I+ + + T+IQ +A+P L GRD++G AKTGSGKT AFL PA+
Sbjct: 526 EQMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPAL 576
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 50.8 bits (116), Expect = 9e-07
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +1
Query: 418 SDQKFTALEGTVCEPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFL 597
SD+ A + E + ++GF+ T IQA IP L G+D+ A TG+GKT AF+
Sbjct: 6 SDEVLNAYDSLDEEAEDRAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFM 65
Query: 598 IPAI-XLIYK 624
+P + L+Y+
Sbjct: 66 LPILERLLYR 75
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = +1
Query: 463 TLLGIKD-MGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIXLIYKL 627
++L I D +G+ T IQ +AIP L+ RD++G A+TGSGKT AF IP + I L
Sbjct: 111 SILEIVDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFAIPLLVWIMGL 166
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +1
Query: 466 LLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
L+GI + GF + IQ ++IP L GRD++ AK G+GKT A+L+P +
Sbjct: 59 LMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLL 106
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +1
Query: 466 LLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
L+GI + GF + IQ ++IP L GRD++ AK G+GKT A+L+P +
Sbjct: 59 LMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLL 106
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 457 EPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIXLIYK--LK 630
E + I G+ T +Q A+P ++ GRDL+ A+TGSGKT A+++P + + K L
Sbjct: 488 EQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSGKTAAYMLPVLTSLIKQGLN 547
Query: 631 FKPRN 645
PR+
Sbjct: 548 APPRS 552
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +1
Query: 451 VCEPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIXLIYKLK 630
+ + T+ ++D G + IQA + +G D++G A+TG+GKTL+F +P + + K
Sbjct: 80 ISQKTIDNLEDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGK 139
Query: 631 FKPRNG 648
+ G
Sbjct: 140 LSQKRG 145
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +1
Query: 487 GFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIXLIY 621
G+ T +Q AIP + RDL+ A+TGSGKT AFLIP + IY
Sbjct: 894 GYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPILSRIY 938
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/56 (37%), Positives = 34/56 (60%)
Frame = +1
Query: 442 EGTVCEPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
E + E L ++ + T +Q +IP ++ GRD++ A+TGSGKT AFL+P +
Sbjct: 715 EANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKTAAFLLPVM 770
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +1
Query: 490 FVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIXLI 618
F T IQ +++ ++ GRD++G A+TGSGKTLA+ +P L+
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCMLL 134
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 460 PTLL-GIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
PTLL G+ + GF + IQ KAIP G DL+ AK+G+GKT F + A+
Sbjct: 22 PTLLRGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIAL 72
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = +1
Query: 487 GFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIXLI 618
GF + IQ +AI P+L+GRD++ A++G+GKT F I + I
Sbjct: 16 GFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAI 59
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/45 (46%), Positives = 26/45 (57%)
Frame = +1
Query: 484 MGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIXLI 618
+G T +Q P LL GRD+ G A GSGK LA+L+P I I
Sbjct: 205 LGVTVPTSLQKHMWPSLLRGRDVAGVAIEGSGKRLAYLLPIIHQI 249
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +1
Query: 517 KAIPPLLEGRDLVGAAKTGSGKTLAFLIP 603
K +P +++G+D+V A+TGSGKT AFLIP
Sbjct: 310 KTLPLVMDGKDVVAMARTGSGKTAAFLIP 338
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +1
Query: 475 IKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
+K MG IQ KA+P + + L+ ++TG+GK+L FL+P++
Sbjct: 175 LKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV 219
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 457 EPTLL-GIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
+P LL I D GF +E+Q + IP + G D++ AK+G GKT F++ +
Sbjct: 55 KPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATL 106
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 457 EPTLL-GIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
+P LL I D GF +E+Q + IP + G D++ AK+G GKT F++ +
Sbjct: 55 KPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATL 106
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 502 TEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
T IQ IP ++ ++ AA+TGSGKTLA+L P +
Sbjct: 402 TVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAPLV 437
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +1
Query: 475 IKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTL 588
+ + G+ + T IQ + +P LL GRD++ A TGSGK L
Sbjct: 211 LSNHGYHSPTPIQMQVLPVLLSGRDVMVCASTGSGKLL 248
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +1
Query: 472 GIKDMGFVTMTEIQAKAIPPLLEGR--DLVGAAKTGSGKTLAFLIPAIXLIYKLKFKPR 642
G+ DMGF ++IQ A+P LL +++ +++G+GKT AF++ + + K P+
Sbjct: 117 GVYDMGFNKPSKIQETALPMLLADPPVNMIAQSQSGTGKTAAFVLTMLSRVDATKPYPQ 175
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1
Query: 442 EGTVCEPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKT 585
E + E L ++ + T +Q +IP ++ GRD++ A+TGSGKT
Sbjct: 138 EANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKT 185
>SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 35.9 bits (79), Expect = 0.028
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +1
Query: 442 EGTVCEPTLL-GIKDMGFVTMTEIQAKAIPP-LLEGRDLVGAAKT 570
EG P +L + D GF T IQ+ +IPP LL RD++GAA+T
Sbjct: 75 EGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAET 119
>SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19)
Length = 304
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 487 GFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAIXL 615
G++ +Q +AI LL +D + TG+GKT+ + IPA+ L
Sbjct: 136 GYIDFRPMQRQAIDTLLAEKDSLILLPTGAGKTICYAIPALLL 178
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 31.5 bits (68), Expect = 0.61
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +1
Query: 544 RDLVGAAKTGSGKTLAFLIPAI 609
+D++G A+TGSGKT AF +P +
Sbjct: 2 KDVIGLAETGSGKTGAFALPIL 23
>SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6)
Length = 127
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 585 CFSRASFGSSHKIPAFQQRRYSFGLN 508
CF+ A G+SH++ AFQ RR LN
Sbjct: 84 CFAGAGLGASHQVAAFQHRRDRLLLN 109
>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +1
Query: 502 TEIQAKAIPPLLEGR-DLVGAAKTGSGKTLAFLIPAI 609
+E+Q +A + +GR D+ + TGSGK+L + +PA+
Sbjct: 20 SELQQRACETVSKGRQDVFVSMPTGSGKSLCYQLPAV 56
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 532 LLEGRDLVGAAKTGSGKTLAFLIPAIXLIYKLKFKPRNG 648
+L RD++ A++G+GKT F I + I +K +NG
Sbjct: 119 VLSARDVIAQAQSGTGKTATFAISILQEI-DTNYKDKNG 156
>SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)
Length = 651
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 496 TMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
T +Q + I + G D + TG GK+L F +PA+
Sbjct: 89 TFRHLQLECINATMSGVDCILIMPTGGGKSLCFQLPAV 126
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 484 MGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPA 606
+GF + Q +A+ +L G + TG+GK+L + +PA
Sbjct: 520 LGFSSFRAGQEQAVMRILSGMSSLVVLSTGAGKSLCYQLPA 560
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 475 IKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKT 570
+K + T IQA+AIP ++ GRD++ T
Sbjct: 120 LKKNSYEKPTPIQAQAIPVIMSGRDMIAIVMT 151
>SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1177
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 544 RDLVGAAKTGSGKTLAFLIPAIXLIYK 624
R LV A TGSGKT+ F + I LI K
Sbjct: 351 RPLVVCAPTGSGKTVIFELAIIRLIMK 377
>SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55)
Length = 284
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = -3
Query: 557 PTRSLPSNKGGIALA*ISVIVTKPISLIPKRVGSHTVPSSAVNF*SDSIP 408
PT S +A + ++T P++++P + H+ PS +V+ S +P
Sbjct: 24 PTPFPSSAMASLAPPTTAALLTTPVTIVPSTISMHSSPSISVSVASSVMP 73
>SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3)
Length = 378
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 489 LCNDDRDSSQSYTSFVGRQGSCG-SC-QNWLWK 581
+C DDR++S + + + R CG SC Q WK
Sbjct: 31 ICQDDRETSNTSLTLLSRLPCCGQSCHQQCFWK 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,410,652
Number of Sequences: 59808
Number of extensions: 222854
Number of successful extensions: 580
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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