Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B05
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       50   2e-08
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 50.0 bits (114), Expect = 2e-08
 Identities = 22/45 (48%), Positives = 30/45 (66%)
 Frame = +1

Query: 475 IKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPAI 609
           IK  G+   T +Q  A+P ++ GRDL+  A+TGSGKT AF +P I
Sbjct: 211 IKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPII 255


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 136 QKTDSNPEPXKDIEALNNEKEAK--KRVVQDGDTN 234
           +K + NP+P   + ALN  K     K V Q G T+
Sbjct: 26  KKRNKNPQPKNAVCALNELKSGAVYKVVDQTGPTH 60


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -3

Query: 479 LIPKRVGSHTVPSSAVNF*SDSIP 408
           L+P+ +  HT P S +   + ++P
Sbjct: 653 LLPRPISCHTTPDSFIEAPNKTLP 676


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 363 GKKIEQRFTWIKPLLRYTIRSKIHCT 440
           GKKI   F  ++PL+ +   S ++ T
Sbjct: 240 GKKITHFFDLVRPLIAFKFHSILNRT 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,950
Number of Sequences: 438
Number of extensions: 1762
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)