Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B03
         (506 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   4.8  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   6.3  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   8.4  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 208 IEYFSFDTAEFARLFSAFMRLTSFTLPFS 122
           I  F  D  EFA L +  +  TSF  P S
Sbjct: 287 ISQFQLDAHEFACLRAIVLFKTSFEKPSS 315


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 72  YSFCGMLVAYSATYAVTI 19
           ++FC M++A   TY V +
Sbjct: 352 WTFCHMMIAALTTYLVIL 369


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 131 SVFSPHNLAVYRKAFDGAQY 72
           + F+ H L    KAF+  QY
Sbjct: 225 TTFTAHQLDELEKAFERTQY 244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,037
Number of Sequences: 336
Number of extensions: 1679
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)