Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_B03
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 154 6e-39
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.40
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 27 1.2
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 27 2.1
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 2.8
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 26 3.7
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 25 4.9
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 25 6.5
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 25 6.5
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 25 6.5
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 25 6.5
SPBC16A3.16 |||mitochondrial inner membrane protein involved in ... 25 8.6
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 25 8.6
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 154 bits (374), Expect = 6e-39
Identities = 73/151 (48%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Frame = +2
Query: 56 MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQ 235
MPQNEYIE + +GRR D+ RGIKAK++ ++RR EKIQ
Sbjct: 1 MPQNEYIEESIRKHGRRFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQ 60
Query: 236 MKKKIKAHEEKNVKQN-TEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP 412
MKK IK HEE+N Q ++ +GA+P YLLDR+ +S+AK+LS+ +KQKRKEKA K+ VP
Sbjct: 61 MKKTIKQHEERNATQRGSDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVP 120
Query: 413 IPKVRAQADAXVFKVLKSGKSXRKAWKRMVT 505
+P+VR A+ +FKV+++GKS + +WKRM+T
Sbjct: 121 LPQVRGVAEEEMFKVIRTGKSKKNSWKRMIT 151
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 29.1 bits (62), Expect = 0.40
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 301 FGDLLCVLFDILLFVRFDFLFHLNLFIAAFLIEYF-SFDTAEFARLFSAFMRLTSF-TLP 128
F LL F +L F+ F F F F++ I YF SF F LF F+ + F +
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHF--LFFFFLCVCVFLSFL 170
Query: 127 FSL 119
FSL
Sbjct: 171 FSL 173
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 27.5 bits (58), Expect = 1.2
Identities = 19/76 (25%), Positives = 41/76 (53%)
Frame = +2
Query: 212 ERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEK 391
E+ + K+++ ++ +K +++ TEK+ + + +R VQS + +M +QK +E
Sbjct: 82 EQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDM-EQKLEEM 140
Query: 392 AGKWDVPIPKVRAQAD 439
K+ KV+A+ D
Sbjct: 141 TDKY----TKVKAELD 152
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -2
Query: 262 FVRFD-FLFHLNLFIAAFLIEYFSFDTAEFARLFSAFMRLTS 140
FV D FL+ LF LI +F+ F LFS F S
Sbjct: 171 FVSVDSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNS 212
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 209 KERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPV 316
+ + NE + + + ++ E+N +NTE++AE + P+
Sbjct: 98 ENQENEADEAENEETSYSEQNHTENTEEIAEESRPL 133
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 281 NTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPI 415
N K +E + +++D+ R+ +LSN+ K K+ VPI
Sbjct: 145 NITKYSEADKMMSTVEKDILVRSFLLSNLKKDSNNSNTFKFRVPI 189
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 4.9
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +2
Query: 56 MPQNEYIERHQKL 94
+PQ EY+E+H+KL
Sbjct: 195 LPQTEYLEKHKKL 207
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 6.5
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 223 IAAFLIEYFSFDTAEFARLF-SAFMRLTSFTLP 128
IAAFL YFS AEF F S LT+ P
Sbjct: 229 IAAFLSSYFSPPNAEFDSTFCSTLSSLTNSEKP 261
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 6.5
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +2
Query: 188 IKAKIFNKERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNM 367
+K KI +E +E ++ K+ K E+N + +T VAE P + + + +++
Sbjct: 204 LKQKI--EEENDEILEDSKESKDENEENKETSTTNVAETDAP----EEETVDTVEEIADE 257
Query: 368 IKQKRKEKAGK 400
K KE++G+
Sbjct: 258 EKHSVKEESGE 268
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 6.5
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Frame = +2
Query: 200 IFNKERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLD-------RDVQSRAKVL 358
+++ +++ + KK+KAH++K + E E A V D +DV++ A
Sbjct: 48 VYHVQQKKASHKRSKKLKAHQDKAESKVNEGKNEAAKVVKEEDLKSSETGKDVETAAAAA 107
Query: 359 SNMIKQKRKEKAGK 400
+ K+K+ +K K
Sbjct: 108 AAAKKKKKNKKKVK 121
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 25.0 bits (52), Expect = 6.5
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = +3
Query: 6 FSLLVW*QRKLPNKQPTCRRTNILSAIKSFTVDG*IMRRENGSVKLVSLINALK----RR 173
FSLL + L + R+ + +K DG +ENG KL L + RR
Sbjct: 450 FSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKENGDAKLAELAKIVNRFIIRR 509
Query: 174 ANSAVSK 194
N +SK
Sbjct: 510 TNDILSK 516
>SPBC16A3.16 |||mitochondrial inner membrane protein involved in
cytochrome c oxidase assembly Pet191
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 85
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 212 ERRNEKIQMKKKIKAHEEKNVKQNTEK 292
E + + + M K+ + EKN Q+TEK
Sbjct: 52 ECKRQMLDMTKRYRIAPEKNTDQDTEK 78
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 305 ALPVYLLDRDVQSRAKVLSNMIKQKRKE 388
+LP + + D+ S V N+IK+K E
Sbjct: 249 SLPAFKIQEDIPSEKIVCYNVIKEKSNE 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,737,771
Number of Sequences: 5004
Number of extensions: 29951
Number of successful extensions: 122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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