Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B03
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960...   159   1e-39
11_06_0284 + 21909758-21913645                                         29   2.1  
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540...    28   5.0  
02_05_0492 - 29476883-29476949,29477030-29477166,29477292-294773...    27   6.5  
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999...    27   6.5  

>07_03_1651 -
           28395369-28395436,28395524-28395575,28395857-28396092,
           28396362-28396419,28396509-28396577,28396686-28396791,
           28397104-28397171,28397266-28397385,28398144-28398231,
           28399433-28399534,28399699-28399757,28399866-28400003,
           28400222-28400473,28400508-28400593,28401061-28401165,
           28402351-28402516
          Length = 590

 Score =  159 bits (386), Expect = 1e-39
 Identities = 80/149 (53%), Positives = 94/149 (63%)
 Frame = +2

Query: 59  PQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQM 238
           PQ ++IE HQK +GRRLDY                     L G K K F K+R  EK QM
Sbjct: 333 PQGDHIELHQKRHGRRLDYEERKRKRAAREVHKRSRDARQLLGAKGKRFAKKRYAEKAQM 392

Query: 239 KKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIP 418
           KK +K H+E   +Q  + V EGALP YLLDRD   RAKVLSN IKQKR EKAGKW+VP+P
Sbjct: 393 KKTLKMHDESTSRQKVDDVQEGALPPYLLDRDQTQRAKVLSNTIKQKRMEKAGKWEVPLP 452

Query: 419 KVRAQADAXVFKVLKSGKSXRKAWKRMVT 505
           KVR  A+  +FKVL++GK   K WKRMVT
Sbjct: 453 KVRPVAEEEMFKVLRTGKRKTKQWKRMVT 481


>11_06_0284 + 21909758-21913645
          Length = 1295

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 229 DSDEKENQSARREECQTEHREGRR 300
           +  EKE +  R+EE Q E +EGR+
Sbjct: 480 EKQEKEKEEERKEEGQNEEKEGRK 503


>08_02_0580 -
           18953208-18953513,18953668-18953868,18953929-18954009,
           18954096-18954410,18954493-18954636,18954733-18954822,
           18954907-18954983,18955122-18955182,18955264-18955490,
           18955581-18955740,18955825-18956025,18956114-18956209,
           18956380-18956565,18956641-18956810,18957044-18957275,
           18958652-18959029
          Length = 974

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
 Frame = -2

Query: 268 LLFVRFDFLFHLNLFIAAFLIEYF-----SFDTAEFARLFSAFMR--LTSFTLPFS 122
           +LF+ F FLF LN+   AF+I  F     S  T  FA     F+   +T+F  P+S
Sbjct: 310 ILFLLF-FLFQLNMLSFAFMISTFVTKAASATTVGFAIFIIGFLTQLVTTFGFPYS 364


>02_05_0492 -
           29476883-29476949,29477030-29477166,29477292-29477383,
           29477490-29477587,29477677-29477804,29477883-29478026,
           29478108-29478397,29478553-29478739,29479085-29479210,
           29480488-29480538,29480952-29481002,29482639-29484054
          Length = 928

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 308 LPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRA--QADAXVFKVLKSG 469
           LP+Y +DRD  +   +LS + +  R + A +  +P+ +  A  + DA  + +L  G
Sbjct: 165 LPMYGMDRDTPALNSLLSALCRASRLDDA-RAAIPVARAEAGTRPDADSYAILLEG 219


>01_06_0116 -
           26595570-26596607,26596964-26598353,26599386-26599923,
           26600562-26601453
          Length = 1285

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/60 (23%), Positives = 23/60 (38%)
 Frame = +2

Query: 209 KERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKE 388
           K+R  EK     K + +++   K+N  K + G    Y   RD +  A           K+
Sbjct: 252 KDREREKKDYDSKHERYDDGGAKKNGSKASRGEEDGYSYKRDTEINASATKEKYNNTEKD 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,004,038
Number of Sequences: 37544
Number of extensions: 178484
Number of successful extensions: 533
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)