Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B02
         (352 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0115 - 11248021-11248101,11249017-11249118                       57   4e-09
05_03_0661 - 16726958-16726966,16727133-16727234                       54   2e-08
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588...    26   9.6  
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376...    26   9.6  
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032...    26   9.6  
03_01_0087 - 704715-705347,705423-706349                               26   9.6  

>01_02_0115 - 11248021-11248101,11249017-11249118
          Length = 60

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 26/59 (44%), Positives = 37/59 (62%)
 Frame = +1

Query: 49  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFKESKVLQEG*PEASQATRE 225
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST     K  +  +  ++   ++ +A  E
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKKSGEAESE 59


>05_03_0661 - 16726958-16726966,16727133-16727234
          Length = 36

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 23/32 (71%), Positives = 27/32 (84%)
 Frame = +1

Query: 49  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 144
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTST 32


>07_01_0766 -
           5885207-5885791,5885874-5886224,5886252-5886269,
           5886339-5886541,5886632-5886890,5887052-5887264,
           5887357-5887482,5887590-5887727,5887817-5888162,
           5888254-5888520,5888983-5889172,5889264-5889363,
           5889444-5889694,5889990-5890182,5890313-5890336
          Length = 1087

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +1

Query: 43  IKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFKESKVLQEG*PEASQATR 222
           I   K K H +  ++R+A +   ++  K R    +A   K+ +E  ++Q+G P     TR
Sbjct: 438 IDYLKDKVHPSFVKDRRAMKREYEE-FKVRINGLVAKAQKVPEEGWIMQDGTPWPGNNTR 496

Query: 223 E 225
           +
Sbjct: 497 D 497


>05_04_0124 +
           18232961-18236636,18236810-18237288,18237549-18237629,
           18238033-18238041,18238096-18238248
          Length = 1465

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +2

Query: 2   LLVLSSDSKWIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRP---GTNPPLRMD 157
           LLVL  D  W E+  KW++ R +    K      + +++       GT PPL ++
Sbjct: 270 LLVL--DDVWNEDEQKWEALRTLLCSCKMGSAVVVTTRNSNVASVMGTVPPLALE 322


>05_04_0122 +
           18198594-18202269,18202551-18202591,18203273-18203281,
           18203336-18203551,18204257-18204361,18204761-18204919
          Length = 1401

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +2

Query: 2   LLVLSSDSKWIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRP---GTNPPLRMD 157
           LLVL  D  W E+  KW++ R +    K      + +++       GT PPL ++
Sbjct: 270 LLVL--DDVWNEDEQKWEALRTLLCSCKMGSAVVVTTRNSNVASVMGTVPPLALE 322


>03_01_0087 - 704715-705347,705423-706349
          Length = 519

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 174 FLKNFGSMRKGGFVPGLPWL 115
           F K FG+   G F+P L WL
Sbjct: 213 FSKLFGAFNVGDFIPWLAWL 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,467,527
Number of Sequences: 37544
Number of extensions: 123373
Number of successful extensions: 414
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)