Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_A23
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 87 2e-18
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 39 5e-04
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 32 0.081
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.33
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.8
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 5.3
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 7.1
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.1
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 9.3
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.3
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 9.3
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 87.0 bits (206), Expect = 2e-18
Identities = 53/146 (36%), Positives = 76/146 (52%), Gaps = 8/146 (5%)
Frame = +3
Query: 231 DKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLXVFDCKLEXKD 407
+ GL ++A +A+S +F +P + K LVVQ+ V E+ ++CGG YL + + +
Sbjct: 89 EAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGE 147
Query: 408 MHGETPYEIMFGPDICGPGTKKVHVIFSYXG-------KNHLIKKDIRCKDDVYTHLYTL 566
M Y IMFGPD CG + VH IF + + HL + T+LYTL
Sbjct: 148 MSNSIDYRIMFGPDKCGVNDR-VHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTL 206
Query: 567 IVKPDNTYEVLIDNXKVESGDLXADW 644
IVKPD T+EV I+ V G L D+
Sbjct: 207 IVKPDQTFEVRINGDVVRQGSLFYDF 232
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 39.1 bits (87), Expect = 5e-04
Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 8/186 (4%)
Frame = +3
Query: 111 FEEKFPDD---SWESNWVYSEHPXKEFGKFKLTAGKFFXDPXDDKGLKTSEDARFYAL-S 278
F E+F + +W S W + K+ G + L D+ GL T + + + L S
Sbjct: 33 FSEQFTSEDITTWRSRWRAPVN--KDLGVWDLVEAPG-SHLRDEYGLITLKSNKPHILIS 89
Query: 279 RKFKPFSNEGK--PLVVQFTVKHEQDIDCGGGYLXVFDCKLEXKDMHGETPYEIMFGPDI 452
P + + P+V+ F VK + CG Y+ + + K++ E P I FG
Sbjct: 90 NLENPTTRQSSSVPIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKK 148
Query: 453 CGPGTKKVHVIFSYXGK--NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNXKVESG 626
CG I SY GK HL + T +YTL+++ + T + D V +G
Sbjct: 149 CGMFDYISLSIISYDGKVSCHLYDAPPSGLVEGRTSMYTLLLQ-NTTVVIRRDQSVVYTG 207
Query: 627 DLXADW 644
D+ ++
Sbjct: 208 DVGTNF 213
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 31.9 bits (69), Expect = 0.081
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = -3
Query: 265 NLASSEVFKPLSSXGSXKNFPAVNLNFPNSFXGCSLYTQLLSHE-SSGNFSSKNTSQFIE 89
N SSE F S+ S P VN + S + ++ L S + S+ NF+S ++S +
Sbjct: 475 NYTSSEAF---STSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLT 531
Query: 88 DNASKLTTTSTT 53
+ S L+T STT
Sbjct: 532 NAKSSLSTPSTT 543
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.9 bits (64), Expect = 0.33
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = -3
Query: 196 NLNFPNSFXGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTT----TSTTAFIFDSQY 29
N N F + + S +SGNFS T Q DN S +T ST F S
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFSTQPGRLSTGLHHFPSDR 634
Query: 28 HLLQQKT 8
LL +T
Sbjct: 635 DLLSNQT 641
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.8
Identities = 34/137 (24%), Positives = 57/137 (41%)
Frame = -3
Query: 457 PQMSGPNIISYGVSPCMSXCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGLPSLLNGLNLR 278
P S I S SP S SS S + +S S TV+ ++ S L +
Sbjct: 336 PTSSSSTISSSSSSPSSSSFSSTTSSS------KSSSSFSSTVSSSSSTSSSTLTSSSSS 389
Query: 277 ERA*NLASSEVFKPLSSXGSXKNFPAVNLNFPNSFXGCSLYTQLLSHESSGNFSSKNTSQ 98
+SS LSS S + + + ++F S ++ SH SS + SS ++
Sbjct: 390 SSR-PASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKP 448
Query: 97 FIEDNASKLTTTSTTAF 47
+ ++S L T+S+ +
Sbjct: 449 ILTASSSSLLTSSSHTY 465
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 114 EEKFPDDSWESNWVYS 161
EEKFPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 159 CTPNCFPTNHQETSPQRIHHNLSKIMPAS*Q 67
C P FP N+QE H+ I AS Q
Sbjct: 791 CKPESFPANYQEVLDYYTHNGFRVIACASKQ 821
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 7.1
Identities = 33/130 (25%), Positives = 54/130 (41%)
Frame = -3
Query: 397 SSLQSKTLRYPPPQSMSCSCLTVNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSXGS 218
+SL S P S S + T ++ +PS + + A ++SS PLSS S
Sbjct: 12 TSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSS--S 69
Query: 217 XKNFPAVNLNFPNSFXGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTAFIFD 38
PA S T L+S SS SS +++ +++ LT++S+ +
Sbjct: 70 SFTSPA----------SSSFITSLVS--SSSQQSSSSSASLTSSSSATLTSSSSASPTSS 117
Query: 37 SQYHLLQQKT 8
S H L +
Sbjct: 118 SSSHALSSSS 127
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +3
Query: 117 EKFPDDSWESNWVYSEHPXKEFGKFKLTAGKFFXDPXDDKGLKTSEDA 260
+ F +D + +W EH K ++ + + F + DD+ + SE +
Sbjct: 49 QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSE-GDDEPFEVSESS 95
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = -1
Query: 141 PTNHQETS---PQRIHHNLSKIMPAS*QRPVQQLSFSIHSTTF 22
PT H T+ P H N + +P + + + ++ ++TTF
Sbjct: 136 PTTHVNTTTVVPPTTHANTTSFVPTTTESSIHPITTGFYNTTF 178
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = +3
Query: 243 KTSEDARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCG 362
KT Y +SRK P L + F K DCG
Sbjct: 952 KTIPRDLLYEVSRKINPLHQASTRLAIAFPDKRLLQYDCG 991
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,681
Number of Sequences: 5004
Number of extensions: 53315
Number of successful extensions: 171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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