Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_A20
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    99   3e-22
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.1  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   5.5  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   9.5  
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    25   9.5  

>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score =   99 bits (238), Expect = 3e-22
 Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 3/184 (1%)
 Frame = +2

Query: 113 RQAYHAGCWYTENGSELSRQLDLWLSKADLTHGPARAIIAPHXXXXXXXXXXXXXXRQVS 292
           R+A HAG WY ++   L++QL  ++       G  R +I+PH              +Q+ 
Sbjct: 6   REATHAGSWYLDDTELLTKQLKSFIKNPTPETGK-RFVISPHAGYMYSGKVASQGFQQLD 64

Query: 293 PVVVKRIFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEAT-RQFDRMDEXT 469
              ++R+F+ GPSHH+    C +S      TPL DL +D+ +  +L A+   FD M    
Sbjct: 65  FSKIQRVFVFGPSHHIFTRKCLVSRASICSTPLGDLKVDEDLCQKLVASDNSFDSMTLDV 124

Query: 470 DENEHSIEMHLPYIA--KVMEEYKTSFTIIPILVXSLTPXKEAKYGAILAPYLADPQNLL 643
           DE+EHS+EM  P +A   + +       I+PI++ +LT          L+ Y+ D  N  
Sbjct: 125 DESEHSLEMQFPLLAFHLLKQGCLGKVKIVPIMIGALTSTTMMAAAKFLSQYIKDESNSF 184

Query: 644 VISS 655
           VISS
Sbjct: 185 VISS 188


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 488 WSAHFHRXARPFYRIDVWPP 429
           WS  +H   +P++R+  W P
Sbjct: 245 WSRDWHVCTKPYFRVIAWDP 264


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 354 ALFRPSTSTRLPFTISPSINKYTRSWRPHVNSIEWT-SXPMKMSTPLKC 497
           ++F+ S S +L  T+S +   Y R  +P+   + WT S PM +S    C
Sbjct: 622 SMFKSSLS-QLMTTVSSTNVHYIRCIKPNEEKLPWTFSPPMVLSQLRAC 669


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 289 QSCGCQTNFHIGPITPRED 345
           QSC CQT F I  + P+ +
Sbjct: 629 QSCACQTLFFICSVVPKTE 647


>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 476 NEHSIEMHLPYIAKVMEEYKTSFTIIP 556
           N +++  HLP + +V+  ++ S  IIP
Sbjct: 323 NTNNLWFHLPSVKRVVNNHELSMEIIP 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,163
Number of Sequences: 5004
Number of extensions: 55356
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)