Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_A20
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0087 + 12163706-12163757,12164877-12164961,12165039-121651...   165   4e-41
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413...    65   5e-11
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177...    27   9.9  
09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287           27   9.9  
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816...    27   9.9  
01_05_0600 + 23566223-23566355,23567752-23567855,23567958-235680...    27   9.9  

>08_02_0087 +
           12163706-12163757,12164877-12164961,12165039-12165107,
           12165757-12165869,12167570-12167681,12167784-12167927,
           12169222-12169396,12169482-12169595,12169734-12169775,
           12171093-12171193,12171515-12171623
          Length = 371

 Score =  165 bits (400), Expect = 4e-41
 Identities = 81/182 (44%), Positives = 106/182 (58%), Gaps = 1/182 (0%)
 Frame = +2

Query: 113 RQAYHAGCWYTENGSELSRQLDLWLSKADLTHGP-ARAIIAPHXXXXXXXXXXXXXXRQV 289
           R+A HAG WYT N  +L  +LD WL  A LT  P  RA+IAPH                +
Sbjct: 5   RRASHAGSWYTNNARKLDEELDGWLRAAGLTKSPDVRAVIAPHAGYSYSGRCAAYAFGNI 64

Query: 290 SPVVVKRIFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEXT 469
            P  + R+F+LGPSHH     CAL+    Y TP+ DL +D ++  EL AT +FD MD   
Sbjct: 65  DPTNISRVFLLGPSHHYYTPKCALTRATIYSTPIGDLPVDHEVIEELNATGKFDFMDLSV 124

Query: 470 DENEHSIEMHLPYIAKVMEEYKTSFTIIPILVXSLTPXKEAKYGAILAPYLADPQNLLVI 649
           DE EHS+EMHLPY++KV + +     ++PILV +L    EA YG +L+ YL DP+N   I
Sbjct: 125 DEAEHSMEMHLPYLSKVFQGHNVK--VVPILVGALNSQNEAMYGQLLSKYLDDPKNFFSI 182

Query: 650 SS 655
           SS
Sbjct: 183 SS 184


>05_03_0442 +
           14040280-14040371,14040449-14040517,14041217-14041329,
           14043110-14043209,14044508-14044682,14044768-14044881,
           14045157-14045287,14048401-14048464,14048585-14048624,
           14049002-14049225,14049634-14049876,14050145-14050313,
           14050569-14050873,14051325-14051511,14051622-14051775,
           14052145-14052207,14052300-14052396,14052500-14052589
          Length = 809

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +2

Query: 158 ELSRQLDLWLSKADLTHGP-ARAIIAPHXXXXXXXXXXXXXXRQVSPVVVKRIFILGPSH 334
           +L  +LD WL  A LT  P   A+IAPH                + P  + R+F+LGPSH
Sbjct: 5   KLDEELDGWLRAAGLTKSPDVSAVIAPHAGYSYSGRCAAYAFGNIDPTNISRVFLLGPSH 64

Query: 335 HVRIAGCALSSLDKYQTPLYDLTIDKQ 415
           H     CAL+    Y TP+ DL +D +
Sbjct: 65  HYYTPKCALTRATIYSTPIGDLPVDHE 91



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 587 EAKYGAILAPYLADPQNLLVISS 655
           EA YG +L+ YL DP+N   ISS
Sbjct: 95  EAMYGQLLSRYLDDPKNFFSISS 117


>11_01_0229 -
           1771701-1774164,1774694-1774847,1774980-1775055,
           1775439-1775477,1778516-1778674,1778741-1778851,
           1779014-1779064,1779173-1779256
          Length = 1045

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 415 LFIDGEIVKGSLVLVEGRKSASCDPHVV 332
           L ++G + +G L L+E R  A C PHVV
Sbjct: 437 LCLEGRVEEG-LKLIEARWGAGCIPHVV 463


>09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287
          Length = 540

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 497 HLPYIAKVMEEYKTSFTIIPILVXSLT 577
           HLPYI  +M+E      ++P+LV  ++
Sbjct: 382 HLPYIHAIMKETMRMHPVVPLLVPRMS 408


>06_03_1303 +
           29180837-29181205,29181289-29181306,29181337-29181622,
           29185008-29186284,29186499-29187005
          Length = 818

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 133 MLV-HRKW*RTVAATRFVAIESRPHPRAGQSDNSTSRRIFLLRRLL 267
           MLV  R+W  ++A +  V    R  P    SD +     FLLRRLL
Sbjct: 384 MLVKRRRWSASMAQSNLVTFCLRKLPSNNDSDPAPLSSSFLLRRLL 429


>01_05_0600 +
           23566223-23566355,23567752-23567855,23567958-23568053,
           23568134-23568253,23568543-23568710,23568921-23569012,
           23569739-23569857,23570547-23570670,23570801-23570924,
           23571291-23571359,23571470-23571561,23571645-23571722,
           23571927-23571994,23572073-23572209
          Length = 507

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 391 KGSLVLVEGRKSASCDPHVV*WAQYE 314
           KGS+ LV+ R+SA CD H   + Q+E
Sbjct: 299 KGSIRLVDLRQSALCDTHSQVFEQHE 324


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,164,177
Number of Sequences: 37544
Number of extensions: 388655
Number of successful extensions: 958
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)