Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_A18
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   168   5e-43
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    46   5e-06
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    38   0.001
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   3.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   5.4  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   7.2  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   7.2  
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    25   9.5  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  168 bits (409), Expect = 5e-43
 Identities = 83/154 (53%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
 Frame = +2

Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 371 KTTAKGLFKILXKYRPET-EXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 547
           K TA  +FK+L KYRPET                          +P  ++ G N V  L+
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143

Query: 548 XXXKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 649
              KA+LV+IA DVDPIELV+FLPALC+KMGVPY
Sbjct: 144 EAKKAKLVLIASDVDPIELVVFLPALCKKMGVPY 177


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = +2

Query: 512 IRSGTNTVTKLVXXXKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 649
           +R G N  TK +    ++ +V+A D +PIE++L LP LC    VPY
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPY 77


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 512 IRSGTNTVTKLVXXXKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 649
           I  G   V K V   +  LV++A D+ P++++  +P LC    VPY
Sbjct: 54  ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPY 99


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 515 RSGTNTVTKLVXXXKAQLVVIAHDVDPIELVLFLPALCRKM 637
           +SG+  +T+ +      +V I + +D +E    LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 533  LCLCRIGWC 507
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 289 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 378
           PHP      SA S ++P   P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +1

Query: 226 HWSGHSANSGLVQICKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTGQDYS 381
           ++  +  N  + Q+   A  YP+ +     SAS  S+P+     P T +  S
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/63 (23%), Positives = 23/63 (36%)
 Frame = +1

Query: 166 KG*AQEDRESSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSASSESAPSD 345
           KG  Q+    S  +E ++L     H                P P P    S + ESAP +
Sbjct: 280 KGAIQDSSIQSYLDEEEKLSRELDHKTKDASSTNDSQTTPLPPPPPVAVNSTNDESAPQN 339

Query: 346 QPI 354
           + +
Sbjct: 340 EEL 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,552
Number of Sequences: 5004
Number of extensions: 43745
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)