Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_A18
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   185   2e-47
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   173   7e-44
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   120   1e-27
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...   100   8e-22
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    45   5e-05
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    34   0.076
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    31   0.54 
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF003386-7|AAB54258.2|  412|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  185 bits (451), Expect = 2e-47
 Identities = 86/155 (55%), Positives = 107/155 (69%)
 Frame = +2

Query: 185 IVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 364
           + NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   
Sbjct: 28  VKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTA 87

Query: 365 LDKTTAKGLFKILXKYRPETEXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKL 544
           LD  +A+  FK+L KYRPE+                         RPNT+R G NT+T+L
Sbjct: 88  LDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRL 147

Query: 545 VXXXKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 649
           V   +AQLV+IAHDV+P+E+VL LPALCRK  VPY
Sbjct: 148 VETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPY 182


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  173 bits (422), Expect = 7e-44
 Identities = 86/155 (55%), Positives = 107/155 (69%)
 Frame = +2

Query: 185 IVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 364
           + NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   
Sbjct: 28  VKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTA 87

Query: 365 LDKTTAKGLFKILXKYRPETEXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKL 544
           LD  +A+  FK+L KYRPE+                         RPNT+R G NT+T+L
Sbjct: 88  LDSQSARQAFKLLDKYRPES--------------------TEVTKRPNTVRHGVNTITRL 127

Query: 545 VXXXKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 649
           V   +AQLV+IAHDV+P+E+VL LPALCRK  VPY
Sbjct: 128 VETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPY 162


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score =  120 bits (288), Expect = 1e-27
 Identities = 52/80 (65%), Positives = 65/80 (81%)
 Frame = +2

Query: 185 IVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 364
           + NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   
Sbjct: 131 VKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTA 190

Query: 365 LDKTTAKGLFKILXKYRPET 424
           LD  +A+  FK+L KYRPE+
Sbjct: 191 LDSHSARQAFKLLDKYRPES 210


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score =  100 bits (240), Expect = 8e-22
 Identities = 43/62 (69%), Positives = 52/62 (83%)
 Frame = +2

Query: 185 IVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 364
           + NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   
Sbjct: 131 VKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTA 190

Query: 365 LD 370
           LD
Sbjct: 191 LD 192


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 17/46 (36%), Positives = 29/46 (63%)
 Frame = +2

Query: 512 IRSGTNTVTKLVXXXKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 649
           ++ G N  TK +    ++++V+A D +P+E++L LP LC    VPY
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPY 80


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +2

Query: 509 TIRSGTNTVTKLVXXXKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 649
           T+R G   V K +   +  + ++A +V PI++   +P +C +  +PY
Sbjct: 68  TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPY 114


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
 Frame = -3

Query: 466 SFSSFP--QPLFXGXFSLRPVFXQNLEKA-LSCSLVQCLGKLV 347
           SF SFP  QP+     +++P F  N+EKA + C ++Q  G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 339 LRSTNLPRHWTRLQLRA 389
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


>AF003386-7|AAB54258.2|  412|Caenorhabditis elegans Hypothetical
           protein F59E12.8 protein.
          Length = 412

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 5   FLFRPFSPKVWYTI*VTYLFVA 70
           FLF PFS  VW  + +T L VA
Sbjct: 54  FLFHPFSTTVWLLLSLTVLVVA 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,661,398
Number of Sequences: 27780
Number of extensions: 253803
Number of successful extensions: 733
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)