Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_A17
(356 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical p... 30 0.55
AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical ... 29 0.72
Z49069-2|CAA88865.1| 333|Caenorhabditis elegans Hypothetical pr... 28 1.7
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 28 1.7
AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen prot... 28 1.7
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 2.2
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 28 2.2
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 27 2.9
AC084156-1|AAK68491.2| 466|Caenorhabditis elegans Hypothetical ... 27 2.9
Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z83232-4|CAB05756.2| 891|Caenorhabditis elegans Hypothetical pr... 27 5.1
U67953-4|AAL13329.1| 732|Caenorhabditis elegans Hypothetical pr... 27 5.1
AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical... 27 5.1
AC006761-8|AAF60552.2| 524|Caenorhabditis elegans Hypothetical ... 27 5.1
Z72509-5|CAA96649.1| 294|Caenorhabditis elegans Hypothetical pr... 26 6.7
U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protei... 26 6.7
AC024799-9|AAK72312.1| 293|Caenorhabditis elegans Hypothetical ... 26 6.7
AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen pro... 26 6.7
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 26 8.9
Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical pr... 26 8.9
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 26 8.9
Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical pr... 26 8.9
Z75549-4|CAA99919.2| 304|Caenorhabditis elegans Hypothetical pr... 26 8.9
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 26 8.9
Z22178-2|CAA80154.1| 261|Caenorhabditis elegans Hypothetical pr... 26 8.9
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 26 8.9
U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical pr... 26 8.9
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 26 8.9
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 26 8.9
AL110500-7|CAB54490.1| 489|Caenorhabditis elegans Hypothetical ... 26 8.9
AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B ... 26 8.9
AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical ... 26 8.9
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 26 8.9
AC024090-6|AAF35428.1| 70|Caenorhabditis elegans Hypothetical ... 26 8.9
>Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical
protein K10C8.3b protein.
Length = 141
Score = 29.9 bits (64), Expect = 0.55
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = -1
Query: 329 RAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHH 153
R S+ ++ + +RP + R ++ P P R RS + + K + V P+H
Sbjct: 17 RKKSKSVKRCSSCKRPNSTRRSKTPDPNSEKEKVRNRSGSSSKKEKKNSLVNPNLQPNH 75
>AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical
protein ZK973.9 protein.
Length = 233
Score = 29.5 bits (63), Expect = 0.72
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +3
Query: 288 PGLCGGPDVPAHG--SAPPGGGEPG 356
PG GGP P HG PP G +PG
Sbjct: 206 PGYPGGPPPPPHGYEGYPPPGAQPG 230
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Frame = +3
Query: 300 GGPDVPAHGSAPP--GGGEP 353
GGP P HG APP GGG P
Sbjct: 133 GGPMQPPHGFAPPPMGGGVP 152
>Z49069-2|CAA88865.1| 333|Caenorhabditis elegans Hypothetical
protein K12D12.3 protein.
Length = 333
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 225 PAANAQLCRLRTPSVSRC-AWAPGLCGGPDVPAHGSAPPGGGEPG 356
PA C+ ++ + ++C A PG G P P P G+PG
Sbjct: 109 PAPTGGSCQCQSAAENKCHAGPPGPKGSPGSPGPNGVPGVDGKPG 153
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 312 HQDHHRGPAPRHSEKHSASEA-DRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 148
+ HH+ P P H H + + E++ ++ DAP T T LV +S P
Sbjct: 220 YSQHHQSPPPHHHHHHPMPKIHENPEQVASPSIEDAPE---TKPTHLVEPQSPKSP 272
>AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen protein
104 protein.
Length = 281
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 285 APGLCGGPDVPAHGSAPPGGGEPG 356
APGL G P H P GGEPG
Sbjct: 161 APGLRGPDGHPGHPGNPGYGGEPG 184
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Frame = +3
Query: 270 SRCAWAPGLCGGPD----VPAHGSAPPGGGEP 353
S C P L GGP +P G PP GG P
Sbjct: 1580 SHCQGPPPLMGGPPPRLGMPPPGPPPPNGGPP 1611
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 273 RCAWAPGLCGGPDVPAHGSAPPGGGEPG 356
R + PG GGP P P G G PG
Sbjct: 28 RYSGGPGTPGGPGTPGGPGTPGGPGTPG 55
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 258 TPSVSRCAWAPGLCGGPDVPAHGSAPPGGGEPG 356
TP PG GGP P P G G PG
Sbjct: 35 TPGGPGTPGGPGTPGGPGTPGGLGTPGGPGTPG 67
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 300 HRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 196
H GP E+H +E D E LL G L D P +
Sbjct: 258 HSGPVAMKMEEHEETEEDFLE-LLNGTLDDVPDSD 291
>AC084156-1|AAK68491.2| 466|Caenorhabditis elegans Hypothetical
protein Y46E12BL.4 protein.
Length = 466
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -3
Query: 345 PLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDA 208
PLR S Q H H R P HS + R E P AL+ A
Sbjct: 309 PLRPPPSSLQHHHHHRRSPPLFHSPVYKPKPRSRTES--PAALKAA 352
>Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical
protein AC3.6 protein.
Length = 325
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 291 GLCGGPDVPAHGSAPPGGGEPG 356
G GGP V H P G G PG
Sbjct: 257 GQPGGPGVDGHPGRPGGSGRPG 278
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 261 PSVSRCAWAPGLCGGPDVPAHGSAPPGGGEPG 356
P S A APG G P P P G+PG
Sbjct: 219 PGQSGGAGAPGPAGAPGAPGGPGQPGQDGQPG 250
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 305 TTTEARRPGTARNTRRPKPTELSVCCRERSETP 207
TTT +RP T T P+P E +E++E P
Sbjct: 163 TTTTTKRPPTTTTTEDPQPFEFHE-LQEQAENP 194
>Z83232-4|CAB05756.2| 891|Caenorhabditis elegans Hypothetical
protein K04B12.3 protein.
Length = 891
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -1
Query: 308 RTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSR 183
R T A+RPG R R K +E V R + E KP +
Sbjct: 352 RLYTNAQRPGERRGADRFKDSEKPVKIRSKEEHLMRVEKPKK 393
>U67953-4|AAL13329.1| 732|Caenorhabditis elegans Hypothetical
protein ZC13.3 protein.
Length = 732
Score = 26.6 bits (56), Expect = 5.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 287 RPGTARNTRRPKPTEL 240
RP T + T++PKPTE+
Sbjct: 189 RPWTVKQTKKPKPTEV 204
>AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical
protein Y41C4A.19 protein.
Length = 289
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +3
Query: 285 APGLCGGPDVP-AHGSAPPGG--GEPG 356
APG GGP P A GS P G G+PG
Sbjct: 220 APGAPGGPGFPGAPGSKGPSGAPGQPG 246
>AC006761-8|AAF60552.2| 524|Caenorhabditis elegans Hypothetical
protein Y41G9A.6 protein.
Length = 524
Score = 26.6 bits (56), Expect = 5.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -1
Query: 305 TTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHHF 150
T+TE P + RP T+L+V ++TP H N+P P ++ SP F
Sbjct: 263 TSTETSSPFFLDQSVRP--TQLAVASSFPAQTPLH-NEPLPPPVTQNSPSIF 311
>Z72509-5|CAA96649.1| 294|Caenorhabditis elegans Hypothetical
protein F32G8.5 protein.
Length = 294
Score = 26.2 bits (55), Expect = 6.7
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 234 NAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPPG-GGEPG 356
NAQ+ TPS ++C PG G P P S P G G PG
Sbjct: 125 NAQIDTYATPSCTQC--TPGPPGAPG-PDGVSGPVGINGRPG 163
>U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protein
139 protein.
Length = 310
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +3
Query: 285 APGLCGG---PDVPAHGSAPPGGGEPG 356
APG+ GG P P AP G G+PG
Sbjct: 180 APGVGGGSGAPGAPGPKGAPGGPGQPG 206
>AC024799-9|AAK72312.1| 293|Caenorhabditis elegans Hypothetical
protein Y49C4A.1 protein.
Length = 293
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 33 VCAVIFPPSYFQRLNYVSP 89
+CAV++P SY +N+V P
Sbjct: 233 ICAVLWPTSYMFDVNHVGP 251
>AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen
protein 106 protein.
Length = 296
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +3
Query: 261 PSVSRCAWAPGLCGGPDVPAHGSAPPGGGEPG 356
P CA PG G P AP G PG
Sbjct: 146 PGPDGCAGEPGTDGAPGEDGQNGAPGSPGGPG 177
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 285 APGLCGGPDVPAHGSAPPGGGEPG 356
APG G P P AP G PG
Sbjct: 247 APGAAGPPGPPGPAGAPGPDGNPG 270
>Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical
protein R11G10.1b protein.
Length = 478
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 312 HQDHHRGPAPRHSEKHSASEADRAE 238
H H R + HS KH+AS +D E
Sbjct: 19 HAYHSRPKSEEHSPKHAASSSDLFE 43
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
protein F54F3.1 protein.
Length = 1584
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 336 AVQSREQGHQDHHRGPAPRHSEKHS 262
A Q++EQ HQ HH+ P+ + S
Sbjct: 326 ARQAQEQHHQQHHQPDQPQQQPQRS 350
>Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical
protein T09E8.1d protein.
Length = 547
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = -3
Query: 330 QSREQGHQDHHRGPAPRH-SEKHSASE 253
Q+ H HH PAPRH S H E
Sbjct: 31 QNGNSHHHHHHLPPAPRHLSSSHHQIE 57
>Z75549-4|CAA99919.2| 304|Caenorhabditis elegans Hypothetical
protein T19C4.4 protein.
Length = 304
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 77 LRLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAP 226
+R++ +T L+Q + S+ +YYN N +V S DG SL P
Sbjct: 218 IRIAFITCLVQACGTALSVIRYYNMNTSMAVTLANFIPFIS-DGLSLVQP 266
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 285 APGLCGGPDVPAHGSAPPGGGEPG 356
APG G P P AP G PG
Sbjct: 246 APGAAGPPGPPGPAGAPGPDGNPG 269
>Z22178-2|CAA80154.1| 261|Caenorhabditis elegans Hypothetical
protein F54C8.2 protein.
Length = 261
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 170 ETKQVEKVYSGDGASLSAPGSKRSALSASDAECF-SLCL 283
E + V DG+SL + SKR+ L+ +D + + LCL
Sbjct: 220 EASEALLVQMFDGSSLISAHSKRATLTTTDVQLYRRLCL 258
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +3
Query: 300 GGPDVPAHGS-APPGGGEPG 356
GGP P + S APP GG PG
Sbjct: 224 GGPPGPFNPSGAPPSGGPPG 243
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +3
Query: 300 GGPDVPAHGS-APPGGGEPG 356
GGP P + S APP GG PG
Sbjct: 254 GGPPGPFNPSGAPPSGGPPG 273
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +3
Query: 300 GGPDVPAHGS-APPGGGEPG 356
GGP P + S APP GG PG
Sbjct: 314 GGPPGPFNPSGAPPSGGPPG 333
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +3
Query: 300 GGPDVPAHGS-APPGGGEPG 356
GGP P + S APP GG PG
Sbjct: 344 GGPPGPFNPSGAPPSGGPPG 363
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +3
Query: 300 GGPDVPAHGS-APPGGGEPG 356
GGP P + S APP GG PG
Sbjct: 404 GGPPGPFNPSGAPPSGGPPG 423
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +3
Query: 300 GGPDVPAHGS-APPGGGEPG 356
GGP P + S APP GG PG
Sbjct: 419 GGPPGPFNPSGAPPSGGPPG 438
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +3
Query: 300 GGPDVPAHGS-APPGGGEPG 356
GGP P + S APP GG PG
Sbjct: 434 GGPPGPFNPSGAPPSGGPPG 453
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +3
Query: 300 GGPDVPAHGS-APPGGGEPG 356
GGP P + S APP GG PG
Sbjct: 449 GGPPGPFNPSGAPPSGGPPG 468
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +3
Query: 300 GGPDVPAHGS-APPGGGEPG 356
GGP P + S APP GG PG
Sbjct: 464 GGPPGPFNPSGAPPSGGPPG 483
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +3
Query: 300 GGPDVPAHGS-APPGGGEPG 356
GGP P + S APP GG PG
Sbjct: 494 GGPPGPFNPSGAPPSGGPPG 513
>U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical
protein K05F1.5 protein.
Length = 472
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 233 CCRERSETPRHRNKPSRPVWSRRSPHHFHCSI 138
CC S P+ + SRP + HFHC I
Sbjct: 97 CCPITS-LPKRLDSCSRPFCKLKKKAHFHCKI 127
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 285 APGLCGGPDVPAHGSAPPGGG 347
APG G P P AP GG
Sbjct: 274 APGNAGAPGAPGEAGAPGSGG 294
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 288 PGLCGGPDVPAHGSAPPGGGEPG 356
PG G P P AP G+PG
Sbjct: 222 PGSAGAPGAPGPAGAPGVDGQPG 244
>AL110500-7|CAB54490.1| 489|Caenorhabditis elegans Hypothetical
protein Y87G2A.7 protein.
Length = 489
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 77 LRLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPG 229
++LS+ L QQ+ S+ + Y ++ V KQ+ ++ GA PG
Sbjct: 419 IKLSEQLYLDQQIKLICSLCQLYPVKMINKVAIKQLLELVVFAGADFEMPG 469
>AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B
protein protein.
Length = 478
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 312 HQDHHRGPAPRHSEKHSASEADRAE 238
H H R + HS KH+AS +D E
Sbjct: 19 HAYHSRPKSEEHSPKHAASSSDLFE 43
>AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical
protein F52F10.4 protein.
Length = 692
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 113 IVVLTSSSWRDVIKP 69
I+ TS++W+DVIKP
Sbjct: 15 IIPTTSATWKDVIKP 29
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 285 APGLCGGPDVPAHGSAPPGGG 347
APG G P P AP GG
Sbjct: 284 APGNAGAPGAPGEAGAPGSGG 304
>AC024090-6|AAF35428.1| 70|Caenorhabditis elegans Hypothetical
protein C52E2.2 protein.
Length = 70
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 279 AWAPGLCGGPDVPAHGSAPPGGG 347
AWAP PA GSA P GG
Sbjct: 12 AWAPSFGLSQGSPAAGSAAPTGG 34
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,152,838
Number of Sequences: 27780
Number of extensions: 167616
Number of successful extensions: 974
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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