Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_A15
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 31 0.19
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 29 0.77
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 27 3.1
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 26 4.1
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 26 4.1
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.4
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 26 5.4
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 25 7.2
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 25 7.2
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 25 9.5
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 25 9.5
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 30.7 bits (66), Expect = 0.19
Identities = 28/97 (28%), Positives = 42/97 (43%)
Frame = +1
Query: 10 NHTHCSDSANKYLRFAMPSESAWVSPPISEDIPTTNXKERSSVIREIEMDVSNDSYVTSA 189
N S SAN + A S+S S P+S + T K +SV R + + S +
Sbjct: 564 NSASRSRSANMIRQGANGSDSNMSSSPVSGNSNTPFNKFPNSVSRNTHFE--SKSPHPNY 621
Query: 190 SRPTIETYQPASSINISTKKDAVKSVKSYKDNVKAXR 300
SR ETY ASS N+ + V + N+ + +
Sbjct: 622 SRTPHETYSKASSKNVPLSPPKQRVVNEHALNIMSEK 658
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 28.7 bits (61), Expect = 0.77
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +1
Query: 427 ASTEANEQGNIDD--VRAKEMEALRRXARADEHAEWERDVRAKXTGVSIPATPR-GRRGI 597
AS E NE+ N ++ V + EA+ + + AE E A T ++ T R GR+
Sbjct: 93 ASNEGNEKNNEENNVVSSDSKEAITK----ESGAELESSEPAS-TNSNVGMTTRSGRQSP 147
Query: 598 RSVSDGSTPKSNASIPGT 651
R+ +TPKS+ S P T
Sbjct: 148 RTPIGSTTPKSSHSPPST 165
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 103 IPTTNXKERSSVIREIEMDVSNDSYVTSASR--PTIETYQPASSINI 237
I T N + S E+ ++ N SY T AS PT T QP +S+N+
Sbjct: 509 INTNNLDAKLSDESELMIE-KNKSYSTPASSTIPTFHTSQPLTSLNM 554
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 389 TLDTLERGDSRVEPPRKQTSKETSMMYVPRKWRRFGVXPALTNTRS 526
T TL + VEP S+ +SM +P RRF + + +S
Sbjct: 516 TYFTLMNNNKGVEPRASVASETSSMTVIPNAMRRFPLARGTSRMKS 561
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 94 SEDIPTTNXKERSSVIREIEMDVSNDSYVTSASRPTIETYQPASSINISTK 246
S++I T + K + ++E+EM S+D TS +T+Q SS TK
Sbjct: 133 SDNIGTVSSK--TIEVQEVEMGESDDQLKTSLRSTVEKTFQELSSKRKRTK 181
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -3
Query: 413 RLSPVYRGLISVIGMSAMLSMDVLGSSDRLLLTDIERDRXAFTLSLYDFTD 261
R+ P Y LI+ G+S LS D G S L T + F S ++ TD
Sbjct: 306 RIKPSYDDLINFKGLSRYLSFD--GESSWGLTTYSLASKYIFNTSHHNLTD 354
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = -1
Query: 562 IHPXLSHARPAPTPRVRQRGLYAEAPPFPWHVHHRCFLARLLPWRL 425
+H H P P + GL PFP FLAR+ RL
Sbjct: 316 VHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRL 361
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 25.4 bits (53), Expect = 7.2
Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 5/140 (3%)
Frame = +1
Query: 55 AMPSESAWVSPPISEDIPTTNXKERSSVIREIEMDVSNDSYVTSASRPTIETYQPASSIN 234
A+P E SP +S PTT+ K+ S+ D+ D + TY
Sbjct: 91 AVPRELQ-TSPIVS---PTTSPKQTPSINVTEPQDLELDKVSQDHEKDQSNTYLMEDGYE 146
Query: 235 ISTKKDAVKSVKSYKDNV-----KAXRXXXXXXXXXXXDDPNTSIESIADIPITLINPRY 399
+D ++ KS D K R P+ ++AD+ + L +
Sbjct: 147 FPLTRDLIRRSKSDADQTPPTGFKHLRHSSCLEMAGSDRTPSMPATTLADLRL-LQKAKE 205
Query: 400 TGERRQSRRASTEANEQGNI 459
G+R + T + G++
Sbjct: 206 LGKRLSGKELPTRVGDNGDV 225
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 7.2
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +1
Query: 31 SANKYLRFAMPSESAWVSPPISEDIPTTNXKERSSVIREIEMDVS----NDSYVTSASRP 198
S+N+ + + S S ++ S D+PT+N +++ R +E S N + +AS P
Sbjct: 310 SSNEPMTSNLTSNSGSMTNSTSTDLPTSNLPSQNAPARPVEPSPSIQPPNLLNLPTAS-P 368
Query: 199 TIETYQPASSINI 237
++ P S NI
Sbjct: 369 ESTSWLPGSQTNI 381
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 481 FPWHVHHRCFLARLLPWRL 425
F WHVH + L +LP+ +
Sbjct: 357 FGWHVHEKAILMVILPFSI 375
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 82 SPPISEDIPTTNXKERSSVIREIEMDVSNDSYVTSASRPTIETYQPASSINIST 243
S PI+ +PT++ +S I + S TS+S + T +SSI+ ST
Sbjct: 96 STPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAST 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.307 0.122 0.339
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,816
Number of Sequences: 5004
Number of extensions: 51565
Number of successful extensions: 121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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