Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_A15
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0354 + 14830325-14830826,14831491-14832416 33 0.15
11_06_0637 + 25715516-25716459,25718196-25718355 33 0.26
08_02_0607 + 19285580-19286138,19286734-19287668 31 0.60
04_03_0353 - 14785648-14787213 31 0.80
05_01_0299 - 2322204-2322734,2324089-2326164 30 1.4
06_03_0290 - 19193707-19193752,19193822-19194090 29 2.4
02_03_0185 - 16134426-16134881 29 2.4
09_03_0099 + 12353777-12353877,12354022-12354220,12354720-123548... 29 4.2
01_06_1152 + 34939884-34941824 29 4.2
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991... 28 5.6
07_03_0186 + 14832933-14833484 28 5.6
08_02_1040 - 23873354-23874509,23875645-23875796 28 7.4
04_04_0648 - 26936123-26936447,26936540-26936841,26937043-269379... 28 7.4
01_06_0357 - 28668894-28669238,28669510-28669537,28669578-286696... 28 7.4
09_04_0749 + 19919367-19920869 27 9.8
03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232... 27 9.8
>04_03_0354 + 14830325-14830826,14831491-14832416
Length = 475
Score = 33.5 bits (73), Expect = 0.15
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Frame = +1
Query: 343 NTSIESIA-DIPITLINPRYTGERRQSRRASTEANEQGNI-DDVRAKEMEALRRXARADE 516
N+++ESI D+P+ P + ++ R TE I DDVR E+EAL R A E
Sbjct: 377 NSTLESIVGDVPMVCW-PFFAEQQTNCRYKRTEWGIGAEIPDDVRRGEVEALIREAMDGE 435
Query: 517 HAEWERDVRAKXTGVSIPATPRGRRGIRSVSD 612
R++R + + A G++G RS+ +
Sbjct: 436 KG---REMRRRVAELRESAVASGQQGGRSMQN 464
>11_06_0637 + 25715516-25716459,25718196-25718355
Length = 367
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +1
Query: 361 IADIPITLINPRYTGERRQSRRASTEANEQGNIDDVRAKEMEALRRXARADEHAEWERDV 540
+A+ P+ + +G+RR++ A E + +R + ++ LRR A E AE ERD
Sbjct: 1 MAESPVATVTDDRSGDRRKAAAAGEEHTSDDLLLLLRRRLLDELRRLREA-EKAERERDA 59
Query: 541 RA 546
R+
Sbjct: 60 RS 61
>08_02_0607 + 19285580-19286138,19286734-19287668
Length = 497
Score = 31.5 bits (68), Expect = 0.60
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = +1
Query: 343 NTSIESIADIPITLINPRYTGERRQSRRASTEANEQGNI-DDVRAKEMEALRRXARADEH 519
N+++ESI + P + ++ R TE I DDVR E+EAL R A E
Sbjct: 399 NSTLESIVGGVPMVCWPFFAEQQTNCRYKRTEWGIGAEIPDDVRRGEVEALIREAMDGEK 458
Query: 520 AEWERDVRAKXTGVSIPATPRGRRGIRSVSD 612
R++R + + A G++G RS+ +
Sbjct: 459 G---REMRRRVAELRESAVASGQQGDRSMQN 486
>04_03_0353 - 14785648-14787213
Length = 521
Score = 31.1 bits (67), Expect = 0.80
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +1
Query: 343 NTSIESIADIPITLINPRYTGERRQSRRASTEANEQGNI-DDVRAKEMEALRRXARADEH 519
N+++ESIA + P + ++ R TE I DDVR E+EAL R A E
Sbjct: 423 NSTLESIAGGVPMVCWPFFAEQQTNCRYKRTEWGIGAEIPDDVRRGEVEALIREAMDGEK 482
Query: 520 AEWERDVRAKXTGVSIPATPRGRRGIRSV 606
R A+ ++ A G R + ++
Sbjct: 483 GREMRRRVAELRESAVAAAKPGGRSVHNI 511
>05_01_0299 - 2322204-2322734,2324089-2326164
Length = 868
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/90 (25%), Positives = 42/90 (46%)
Frame = +1
Query: 1 PASNHTHCSDSANKYLRFAMPSESAWVSPPISEDIPTTNXKERSSVIREIEMDVSNDSYV 180
P S +T +DS+ +PS VS +IP KE S+ + + +V
Sbjct: 286 PNSYNTAKADSSATPANLNVPSSKPSVSGKAQSEIPNLKPKENSNPVPD---HSEEQPFV 342
Query: 181 TSASRPTIETYQPASSINISTKKDAVKSVK 270
+A++P ++ +P S S+K+D++ K
Sbjct: 343 AAATQP-VKDDKPIPSKRGSSKRDSLHRQK 371
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 559 VSIPATPRGRRGIRSVSDGSTPKSNASIPG 648
V I A RGRR S S G TP ++ +PG
Sbjct: 11 VGIEAAGRGRRVAASPSPGGTPAASRGLPG 40
>02_03_0185 - 16134426-16134881
Length = 151
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 392 LDTLERGDSRVEPPRKQTSKETSMMYVP-RKWRRFGVXPALTNTRSGSGTCVRKXRVY 562
+ T S+ E R++ E + ++P R+WRR T+ +G C R+ R +
Sbjct: 3 MTTARHRSSQAEERRRRRCSERARRWLPPRRWRRRREGKEEVATQGDNGDCARERRTW 60
>09_03_0099 +
12353777-12353877,12354022-12354220,12354720-12354845,
12354935-12355093,12356286-12356415,12356551-12356592,
12357507-12357806,12357933-12357984,12358157-12358234,
12359133-12359229
Length = 427
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 382 LINPRYTGERRQSRR-ASTEANEQGNIDDVRAKEM 483
LINP ERR RR E ++QG DVR E+
Sbjct: 63 LINPELAAERRARRRHRKDEDDQQGVASDVRGFEV 97
>01_06_1152 + 34939884-34941824
Length = 646
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 470 VPRKWRRFGVXPALTNTRSGSGTCVRKXRVYRYLPRPEGGGASDPLVT 613
+PR R A+ + + +G V +YR + PEGGG VT
Sbjct: 226 MPRASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVT 273
>12_01_0978 +
9908001-9908175,9908538-9908619,9910793-9910904,
9911965-9913737
Length = 713
Score = 28.3 bits (60), Expect = 5.6
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
Frame = +1
Query: 145 EIEMDVSNDSYVTSASRPTIETYQPASSINISTKKDA---VKSVKSYKDNVKAXRXXXXX 315
E+E V+ +S TSAS + Q SS + + ++A KS +D +A R
Sbjct: 439 ELEAAVAAESKATSASDDLMLALQQLSSESKNALQEAEVMQKSAADLRDEAEAARVALAE 498
Query: 316 XXXXXXDDPNTSIESIADIPITLINPRYTGERRQSRRASTEANEQGNIDDVRAKEMEALR 495
+ E+ + L + ER + RAST +E G + +E E+L
Sbjct: 499 AEQKLQSALKEAEEAKSAEAKALDQIKQLSERASAARAST--SESGAKITISKEEFESLS 556
Query: 496 RXARADE 516
R E
Sbjct: 557 RKVEESE 563
>07_03_0186 + 14832933-14833484
Length = 183
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +1
Query: 427 ASTEANEQGNIDDVRAKEMEALRRXARADEHAEWERDVRAKXTGVSIPATPR 582
+S + + G++ D + + R + E +W+R + G +PA PR
Sbjct: 100 SSEDKGKMGSVRDAKKDDANGFSRGS--PEGNQWQRGLAGTDAGARVPAVPR 149
>08_02_1040 - 23873354-23874509,23875645-23875796
Length = 435
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 49 RFAMPSESAWVSPPISEDIPTTNXKERSS-VIREIEMDVSNDSYVTSASRPTIETYQPAS 225
RF +PS ++W+ P++ T RSS +R D + + +A P+ + P S
Sbjct: 300 RFPIPSAASWLGVPVARARMTALRWVRSSTALRGNSSDAAAAAAAAAAPSPSSASSTPTS 359
Query: 226 S 228
S
Sbjct: 360 S 360
>04_04_0648 -
26936123-26936447,26936540-26936841,26937043-26937915,
26937995-26938108,26938285-26938612,26938719-26938843,
26938926-26938991,26939099-26939166,26939262-26939343,
26939433-26939546,26939647-26939747,26940429-26940678
Length = 915
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +1
Query: 19 HCSDSANKYLRFAMPSESAWVSPPISEDIPTTNXKERSSVIREIEMDVSND 171
H A ++F PS + SPP S +PT S + E D+ +
Sbjct: 461 HKPQQAENNVQFTTPSRYSVSSPPFSGMLPTNRSDHLSQISNEDSDDICKE 511
>01_06_0357 -
28668894-28669238,28669510-28669537,28669578-28669635,
28669836-28669916,28670395-28670526,28670609-28670926,
28672495-28673317
Length = 594
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 4 ASNHTHCSDSANKYLRFAM-PSES 72
+ NHTHC D+A K FA+ PS S
Sbjct: 356 SGNHTHCLDNAMKVQLFAVFPSSS 379
>09_04_0749 + 19919367-19920869
Length = 500
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/73 (32%), Positives = 32/73 (43%)
Frame = +2
Query: 389 TLDTLERGDSRVEPPRKQTSKETSMMYVPRKWRRFGVXPALTNTRSGSGTCVRKXRVYRY 568
+LD L RG++ P +T M +VPR RR G A T++ + V
Sbjct: 99 SLDELLRGEAERGTPATVVVYDTFMPWVPRLARRHGAACAAFLTQTCAVDVVYTHARSGR 158
Query: 569 LPRPEGGGASDPL 607
LP P G A PL
Sbjct: 159 LPVPV-GEADGPL 170
>03_02_0726 + 10722759-10722857,10722969-10723058,10723141-10723245,
10723597-10723698,10724721-10724805,10725281-10725365,
10725473-10725517,10725685-10728672,10728839-10729055,
10729193-10729765
Length = 1462
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 55 AMPSESAWVSPPISEDIP 108
AMPS AWV IS DIP
Sbjct: 1309 AMPSADAWVQQFISHDIP 1326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.307 0.122 0.339
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,297,977
Number of Sequences: 37544
Number of extensions: 390135
Number of successful extensions: 976
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
- SilkBase 1999-2023 -