Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_A15
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr... 32 0.41
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 29 2.2
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 29 2.2
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 29 2.2
Z93374-4|CAB07556.1| 834|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z77664-1|CAB01216.2| 900|Caenorhabditis elegans Hypothetical pr... 28 5.0
AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf (tbp-asso... 28 5.0
AF039047-12|AAM15590.1| 226|Caenorhabditis elegans Hypothetical... 28 5.0
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical pr... 27 8.7
>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical protein
T26A5.5a protein.
Length = 1076
Score = 31.9 bits (69), Expect = 0.41
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +1
Query: 61 PSESAWVSPPISEDIPTTNXKERSSVIREIEMDVSNDSY--VTSASRPTIETYQPASSIN 234
P V+P S +P T+ R S+ + +DV NDS + AS PT T +
Sbjct: 968 PYTPTTVTPSRSSWLPNTSSINRHSIEDDSPIDVVNDSLSPINIASSPTYPTAITPPPVT 1027
Query: 235 IS-TKKDAVKSVKSYKDN 285
+S KKD KS+ +
Sbjct: 1028 LSDLKKDMSNGRKSHSQH 1045
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 352 IESIADIPITLINPRYTGERRQSRRASTEANEQGNIDDVRAKE 480
++ + D L+N R T +RR+SR Q N+D +++E
Sbjct: 1258 VQDMLDRERNLMNKRSTAQRRESRNIEKMKKSQENLDKEKSEE 1300
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 352 IESIADIPITLINPRYTGERRQSRRASTEANEQGNIDDVRAKE 480
++ + D L+N R T +RR+SR Q N+D +++E
Sbjct: 1258 VQDMLDRERNLMNKRSTAQRRESRNIEKMKKSQENLDKEKSEE 1300
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 352 IESIADIPITLINPRYTGERRQSRRASTEANEQGNIDDVRAKE 480
++ + D L+N R T +RR+SR Q N+D +++E
Sbjct: 1258 VQDMLDRERNLMNKRSTAQRRESRNIEKMKKSQENLDKEKSEE 1300
>Z93374-4|CAB07556.1| 834|Caenorhabditis elegans Hypothetical
protein C06C6.6 protein.
Length = 834
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +1
Query: 409 RRQSRRASTEANEQGNIDDVRAKEMEALRRXARADEHAEWERDVRAKXTGVSIPATPRGR 588
RRQ RA ++ NI+++ ++E + R+ ARA + E + K G + T
Sbjct: 43 RRQLVRAVNPHDKHSNINNIDSQEHSSRRQFARAVDDNEDPNTLFEKLPGAARVVTAIAI 102
Query: 589 RGIRSVSDGSTP 624
I SDGS P
Sbjct: 103 --INGFSDGSIP 112
>Z77664-1|CAB01216.2| 900|Caenorhabditis elegans Hypothetical
protein F53H10.2 protein.
Length = 900
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +3
Query: 351 HRKHRRHTDNAYQ-PSIHWREATVASSLHGSKRARKH 458
H+ H H ++ Q P HWR ++ H RKH
Sbjct: 165 HQVHPYHANHQQQHPQQHWRNQAASNGNHNPMYMRKH 201
>AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 4
protein.
Length = 523
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 9 QPHALQRLRQQIPSFRNAVRIG 74
QPH L L+ +P+ RNAVR G
Sbjct: 162 QPHLLPFLQNTLPALRNAVRNG 183
>AF039047-12|AAM15590.1| 226|Caenorhabditis elegans Hypothetical
protein K11D12.12 protein.
Length = 226
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 406 ERRQSRRASTEANEQGNIDDVRAKEMEALRR 498
E+RQ R A E GN+D++R K E++ +
Sbjct: 185 EKRQHRDVKRLAIEHGNMDEIRRKAEESVNK 215
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 535 PAPTPRVRQRGLYAEAPPFPWHVHHRCFLARLLP 434
PAPTP + Q A PP P +H L +P
Sbjct: 142 PAPTPGIPQMNQGAHLPPQPHQIHQPTPLRPQIP 175
>Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical
protein W07G1.5a protein.
Length = 438
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 361 IADIPITLINPRYTGERRQSRRASTEANEQGNIDDVRAKEMEALRRXARADEHAEWERD 537
+A P T P R+ + +S E ++GN D+ +E+E A +DE E D
Sbjct: 323 VASRPATAKAPGTPANRQPTPESSEEEEDEGNGDEDDDEEVEDDEEDAGSDEAEEEPSD 381
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.307 0.122 0.339
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,560,531
Number of Sequences: 27780
Number of extensions: 297108
Number of successful extensions: 732
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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