Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_A15
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   2.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.8  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 562 SIPATPRGRRGIRSVSDGSTPKSNASIPG 648
           S+P  PR   G    S G +P S+ S  G
Sbjct: 55  SVPQPPRSLEGSYDSSSGDSPVSSHSSNG 83


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 373 PITLINPRYTGERRQSRRASTEANEQGN 456
           P T   PR T  R   R    E+NE  N
Sbjct: 162 PRTTFEPRATDSRHYDRYKEEESNENYN 189


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 46  LRFAMPSESAWVSPPIS 96
           LR   P++  W+ PPIS
Sbjct: 379 LRNGCPADWLWIVPPIS 395


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 441 CFRGGSTRLSPLSSVSRVDKRYRYVGDAFYGRVGI 337
           C + G      ++SVS +DK  R V  A +G + I
Sbjct: 451 CRKRGEKIARHINSVSYIDKVARIVFPASFGLLNI 485


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +2

Query: 536 TCVRKXRVYRYLPRPEGGGASDPLVTEALLSLMRAY 643
           +C R  R         G   +DPLV E    L+R +
Sbjct: 15  SCTRPSRGNAVPSSQRGNVHNDPLVVETTSGLVRGF 50


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +2

Query: 536 TCVRKXRVYRYLPRPEGGGASDPLVTEALLSLMRAY 643
           +C R  R         G   +DPLV E    L+R +
Sbjct: 15  SCTRPSRGNAVPSSQRGNVHNDPLVVETTSGLVRGF 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.307    0.122    0.339 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,839
Number of Sequences: 438
Number of extensions: 4013
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)