Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_A14
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    86   1e-18
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    24   5.5  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    24   5.5  
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    24   7.3  
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    24   7.3  
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    23   9.6  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    23   9.6  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 86.2 bits (204), Expect = 1e-18
 Identities = 36/54 (66%), Positives = 41/54 (75%)
 Frame = +3

Query: 81  MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 242
           M H N+W+SHPR+YG+GSR C     R GLIRKYGLNI RQ F EYA+DIGF K
Sbjct: 1   MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 98  LVFSPSQIRTRISVMPI 148
           LV+ PSQIR R+S++ +
Sbjct: 26  LVYRPSQIRRRVSLLSL 42


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 123 GQGSRSCRSCSNRHGLIRKYGLNICRQCFXE 215
           G GS    +  N+ G +  +GLNI RQC  E
Sbjct: 285 GAGSYHSFAIDNK-GRVYAWGLNITRQCGIE 314


>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 122 RTRISVMPILLQQA-WLN--PQVRFEHMQTVLXRVCS*HRIQEAGL 250
           +T +S +  LL+ A  +N  PQ+RFEH +  L RV   +  ++A L
Sbjct: 4   KTNLSNITTLLRSARCMNRMPQLRFEHTKGDLKRVNRSYETRDAML 49


>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 142 HDRDPCPYL 116
           H RDPCPY+
Sbjct: 6   HTRDPCPYV 14


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 122 RTRISVMPILLQQAW 166
           +T + V+P LLQQ+W
Sbjct: 73  KTSVKVVPWLLQQSW 87


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1115

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 50   SLARNNLIS*NGPRKYLVFSPSQIRTRISVMPILLQQAWLNP 175
            SLAR +++   GP K L F    + T   V   L + + ++P
Sbjct: 918  SLARVSVLRGEGPNKGLPFIDDYVATDDKVTDYLTEYSGIHP 959


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,108,752
Number of Sequences: 5004
Number of extensions: 20217
Number of successful extensions: 44
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)