Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_A14
         (340 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...   100   5e-22
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    31   0.21 
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    31   0.21 
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    27   2.6  
Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AF100669-3|AAK39266.1|  747|Caenorhabditis elegans Hypothetical ...    27   4.5  
AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical ...    27   4.5  
AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical ...    27   4.5  
AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical...    26   7.9  
AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical...    26   7.9  
AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical...    26   7.9  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score = 99.5 bits (237), Expect = 5e-22
 Identities = 39/56 (69%), Positives = 47/56 (83%)
 Frame = +3

Query: 81  MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKKLD 248
           MG  N+W+SHPR++G GSRSCR C+  HGLIRKYGL++CR+CF E A DIGFKKLD
Sbjct: 1   MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 141 CRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 242
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 47  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 141 CRSCSNRHGLIRKYGLNICRQCFXEYAHDIGFKK 242
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 57  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 128 RISVMPILLQQAWLNPQVRFEHMQTVLXRVCS*H 229
           RI   P++L+Q WL    R E       R+CS H
Sbjct: 27  RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60


>Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical
           protein K10D6.1 protein.
          Length = 457

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 140 MPILLQQAWLNPQVRFEHMQTVLXRVCS*HRIQE 241
           M I + + WL+P ++F+H+      +   H++ E
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134


>AF100669-3|AAK39266.1|  747|Caenorhabditis elegans Hypothetical
           protein R11E3.4 protein.
          Length = 747

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 75  LKMGHANIWYSHPRRYGQGSR-SCRSCSNRHGLIRKY 182
           LK   A  W+ +P+R G  +R  C SC     ++R +
Sbjct: 482 LKKQLARPWFVNPKRIGNVARICCHSCQPNMAMVRVF 518


>AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.9 protein.
          Length = 250

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 164 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWXNL 12
           M   A S  PR+  +  +    N     + +LNC S+T ++ ++P+ W  +
Sbjct: 93  MKTAAASTCPRTCGLCCQTEAYNCPNVAYPRLNCASITLSQCNSPA-WRTI 142


>AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical
           protein C15F1.5a protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 183 RTCGLSHACWSRIGMTEILVRICEGEN 103
           R C ++H C+S +   E +   CEGEN
Sbjct: 40  RVCPVAH-CYSSLTAPEPMTSTCEGEN 65


>AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +2

Query: 134 SVMPILLQQAWLNPQVRFEHMQTV--LXRVCS*HR-IQEAGLNGVXIIN 271
           S M IL  Q W +P + FEH +    L  +   HR +    L  V I+N
Sbjct: 131 STMHILFSQIWHDPGLSFEHEEGAHCLTNLSLSHRMVDNIWLPNVCIVN 179


>AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +2

Query: 134 SVMPILLQQAWLNPQVRFEHMQTV--LXRVCS*HR-IQEAGLNGVXIIN 271
           S M IL  Q W +P + FEH +    L  +   HR +    L  V I+N
Sbjct: 131 STMHILFSQIWHDPGLSFEHEEGAHCLTNLSLSHRMVDNIWLPNVCIVN 179


>AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical
           protein T15B7.16 protein.
          Length = 435

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 140 MPILLQQAWLNPQVRFEHMQTVL 208
           + +L  Q W +P++RF+H+   L
Sbjct: 80  LDLLFSQIWHDPRLRFDHLTNCL 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,124,403
Number of Sequences: 27780
Number of extensions: 116183
Number of successful extensions: 304
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)