Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_A02
         (645 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-...    61   2e-08
UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4; ...    58   2e-07
UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box prot...    46   0.001
UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4; Endopterygot...    44   0.004
UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona intesti...    39   0.12 
UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular orga...    38   0.16 
UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhanc...    37   0.36 
UniRef50_O46173 Cluster: Y-box protein; n=5; cellular organisms|...    37   0.36 
UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: ...    36   0.84 
UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular o...    36   0.84 
UniRef50_UPI0000EB29DF Cluster: UPI0000EB29DF related cluster; n...    35   1.5  
UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias...    35   1.5  
UniRef50_Q0E9S0 Cluster: Putative beta-type carbonic anhydrase; ...    35   1.5  
UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep: MG...    35   1.9  
UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius auratus...    35   1.9  
UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box fact...    34   2.6  
UniRef50_UPI00005A214C Cluster: PREDICTED: similar to adiponutri...    33   4.5  
UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ ce...    33   4.5  
UniRef50_UPI00005A6017 Cluster: PREDICTED: similar to PAS domain...    33   7.8  

>UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-box
           protein - Bombyx mori (Silk moth)
          Length = 272

 Score = 61.3 bits (142), Expect = 2e-08
 Identities = 25/26 (96%), Positives = 25/26 (96%)
 Frame = +3

Query: 12  PXGEPVKGSPYAADKRRGYHRQYFPR 89
           P GEPVKGSPYAADKRRGYHRQYFPR
Sbjct: 107 PGGEPVKGSPYAADKRRGYHRQYFPR 132



 Score = 57.6 bits (133), Expect = 2e-07
 Identities = 26/37 (70%), Positives = 27/37 (72%)
 Frame = +3

Query: 402 RGPSLKVTNXXXXXXXXXPMRARPRHPXAVMCGTSFM 512
           +GPSLKVTN         PMRARPRHP AVMCGTSFM
Sbjct: 236 QGPSLKVTNLLVLLLRQLPMRARPRHPEAVMCGTSFM 272


>UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4;
           cellular organisms|Rep: Putative uncharacterized protein
           - Lonomia obliqua (Moth)
          Length = 254

 Score = 57.6 bits (133), Expect = 2e-07
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +3

Query: 12  PXGEPVKGSPYAADKRRGYHRQYFPR 89
           P GEPVKGSPYAADKRRGY+RQY+PR
Sbjct: 98  PGGEPVKGSPYAADKRRGYYRQYYPR 123


>UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box protein
           Ct-p40; n=1; Nasonia vitripennis|Rep: PREDICTED: similar
           to Y-box protein Ct-p40 - Nasonia vitripennis
          Length = 335

 Score = 45.6 bits (103), Expect = 0.001
 Identities = 21/26 (80%), Positives = 22/26 (84%)
 Frame = +3

Query: 12  PXGEPVKGSPYAADKRRGYHRQYFPR 89
           P GE VKGSPYAADKRRGY RQY+ R
Sbjct: 138 PDGEAVKGSPYAADKRRGY-RQYYNR 162


>UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4;
           Endopterygota|Rep: Y-box protein Ct-p50 - Chironomus
           tentans (Midge)
          Length = 317

 Score = 43.6 bits (98), Expect = 0.004
 Identities = 21/35 (60%), Positives = 25/35 (71%)
 Frame = +3

Query: 12  PXGEPVKGSPYAADKRRGYHRQYFPRSRLADEAVK 116
           P GEPVKGSPYAADKRRG   +Y+ R+R    + K
Sbjct: 99  PEGEPVKGSPYAADKRRG---RYWSRNRRRTSSTK 130


>UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona
           intestinalis|Rep: Y-box protein 1/2/3 - Ciona
           intestinalis (Transparent sea squirt)
          Length = 320

 Score = 38.7 bits (86), Expect = 0.12
 Identities = 18/28 (64%), Positives = 21/28 (75%)
 Frame = +3

Query: 12  PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
           P GEPVKGS YAAD+RR Y  +Y PR +
Sbjct: 96  PNGEPVKGSKYAADRRR-YKPRYKPRPK 122


>UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular
           organisms|Rep: ENSANGP00000031633 - Anopheles gambiae
           str. PEST
          Length = 166

 Score = 38.3 bits (85), Expect = 0.16
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +3

Query: 12  PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
           P GEPVKGS YAA+KRRG+   +  R +
Sbjct: 79  PQGEPVKGSQYAAEKRRGFRHWWQKRGQ 106


>UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhancer
           factor II; n=1; Gallus gallus|Rep: Rous sarcoma virus
           transcription enhancer factor II - Gallus gallus
           (Chicken)
          Length = 298

 Score = 37.1 bits (82), Expect = 0.36
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = +3

Query: 12  PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
           P G PV+GS YAAD+RR Y R YF R R
Sbjct: 157 PDGVPVEGSRYAADRRR-YRRGYFGRRR 183


>UniRef50_O46173 Cluster: Y-box protein; n=5; cellular
           organisms|Rep: Y-box protein - Drosophila melanogaster
           (Fruit fly)
          Length = 359

 Score = 37.1 bits (82), Expect = 0.36
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = +3

Query: 12  PXGEPVKGSPYAADKRRGYHRQYFPRSRLADEAVK 116
           P GEPV+GS +AADKRR + R +  ++R  D  V+
Sbjct: 131 PSGEPVRGSQFAADKRRNF-RPWMKKNRRKDGEVE 164


>UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: DNA
           binding protein - Canis familiaris (Dog)
          Length = 96

 Score = 35.9 bits (79), Expect = 0.84
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = +3

Query: 12  PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
           P G PV+GS YAAD+RR Y R Y+ R R
Sbjct: 62  PDGVPVEGSRYAADRRR-YRRGYYGRRR 88


>UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular
           organisms|Rep: DNA-binding protein A - Homo sapiens
           (Human)
          Length = 372

 Score = 35.9 bits (79), Expect = 0.84
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = +3

Query: 12  PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
           P G PV+GS YAAD+RR Y R Y+ R R
Sbjct: 160 PDGVPVEGSRYAADRRR-YRRGYYGRRR 186


>UniRef50_UPI0000EB29DF Cluster: UPI0000EB29DF related cluster; n=1;
           Canis lupus familiaris|Rep: UPI0000EB29DF UniRef100
           entry - Canis familiaris
          Length = 217

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 18/51 (35%), Positives = 20/51 (39%)
 Frame = +1

Query: 253 PWGRSWPNEXRRVPPSAXAQFPGGAGRTKSXSAPKWPGWRCLSYNIKPTAG 405
           PWG  WP       P      PGGA    S  +P  PG R      +PT G
Sbjct: 145 PWG--WPRPAGAQEPRLGRDLPGGAAGAHSAGSPGGPGRRPRGREPRPTQG 193


>UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias
           latipes|Rep: Cold-shock domain protein - Oryzias latipes
           (Medaka fish) (Japanese ricefish)
          Length = 366

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +3

Query: 12  PXGEPVKGSPYAADKRRGYHRQYFPRS-RLADE 107
           P G PVKGS YA +KRR + R++FP+  R AD+
Sbjct: 72  PGGIPVKGSRYAPNKRR-FRRRFFPQGPRPADQ 103


>UniRef50_Q0E9S0 Cluster: Putative beta-type carbonic anhydrase;
           n=1; Pleurochrysis haptonemofera|Rep: Putative beta-type
           carbonic anhydrase - Pleurochrysis haptonemofera
          Length = 260

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 15/62 (24%), Positives = 37/62 (59%)
 Frame = +3

Query: 237 IFAVDAVGEVLAQ*IXEGSAECVRAISRRGREDKIXLSAKMARMEMPQLQHQTNSRGPSL 416
           +   D+  ++++  I + + + + + S+RG  D++ +SA  A+M++ + + +T S G  L
Sbjct: 134 VVLADSDSKIVSAAIDQVAGDVIPSASQRGVLDRVMVSAMRAKMQVDKAEKKTTSAGRKL 193

Query: 417 KV 422
           K+
Sbjct: 194 KI 195


>UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep:
           MGC115344 protein - Xenopus laevis (African clawed frog)
          Length = 221

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +3

Query: 12  PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
           P G PV+GS YAAD+RR Y R Y+ + R
Sbjct: 75  PKGAPVQGSRYAADRRR-YRRGYYGQRR 101


>UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius
           auratus|Rep: Y box protein 2 - Carassius auratus
           (Goldfish)
          Length = 297

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = +3

Query: 12  PXGEPVKGSPYAADKRRGYHRQYFPRS 92
           P G PVKGS YA +KRR + R+++PR+
Sbjct: 90  PGGIPVKGSRYAPNKRR-FRRRFYPRN 115


>UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box factor;
           n=4; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to Y-Box factor - Strongylocentrotus purpuratus
          Length = 326

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = +3

Query: 12  PXGEPVKGSPYAADKRR-----GYHRQYFPRSRLADE 107
           P G PV GS YAADKRR      Y+R+  PR+   DE
Sbjct: 93  PEGAPVVGSKYAADKRRYRGRPRYYRRRRPRNSQGDE 129


>UniRef50_UPI00005A214C Cluster: PREDICTED: similar to adiponutrin;
           n=1; Canis lupus familiaris|Rep: PREDICTED: similar to
           adiponutrin - Canis familiaris
          Length = 451

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = +1

Query: 229 PSQFSRWTPWGRSWPNEXRRVPPSAXAQFPGGAGRTKSXSAPKWPGW------RCLS 381
           PS  S WTP GR  P E RR P  A A +    G + S S   + G+      RCLS
Sbjct: 82  PSSPSLWTPHGRPSPREPRRGPRRAAAMYDPERGWSLSFSGCGFLGFYHVGVTRCLS 138


>UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ
           cell-specific Y-box-binding protein) (Contrin) (MSY2
           homolog).; n=1; Xenopus tropicalis|Rep: Y-box-binding
           protein 2 (Germ cell-specific Y-box-binding protein)
           (Contrin) (MSY2 homolog). - Xenopus tropicalis
          Length = 199

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 12  PXGEPVKGSPYAADKRRGYHRQYFPRSRLADEA 110
           P G PVKGS +A ++RR   R Y PR+  A E+
Sbjct: 109 PGGVPVKGSRFAPNRRRFRRRFYRPRADTAGES 141


>UniRef50_UPI00005A6017 Cluster: PREDICTED: similar to PAS domain
           containing 1; n=2; Canis lupus familiaris|Rep:
           PREDICTED: similar to PAS domain containing 1 - Canis
           familiaris
          Length = 1274

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 244 RWTPWGRSWPNEXRRVPPSAXAQFPGGAGRT 336
           RW PW R W  + RR  PS     P G  +T
Sbjct: 6   RWVPWARGWRTQRRRRRPSGPPPPPPGPPQT 36


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 558,683,027
Number of Sequences: 1657284
Number of extensions: 10030376
Number of successful extensions: 27272
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 26350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27259
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)