Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_A02
         (645 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   3.6  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   8.3  

>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 288  GSAECVRAISRRGREDKIXLSAKMARMEMPQLQHQTNSR 404
            G    + + S R  E +  + A+MAR+     QHQ + R
Sbjct: 1071 GERPSMPSSSPRTSERRANIRARMARLRQRHRQHQQDER 1109


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 465 LSLVVVSIVVPTGLLLLGLAPCCWFDVVAEASPS 364
           +++ V++ +VP  L+L   + CC F  V+ A  S
Sbjct: 803 VAVCVIASMVPICLILAEDSECCSFSGVSNAGLS 836


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,314
Number of Sequences: 2352
Number of extensions: 10717
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63559560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)