Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_A02
(645 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X95325-1|CAA64631.1| 372|Homo sapiens DNA-binding protein protein. 36 0.12
X72712-1|CAA51261.1| 372|Homo sapiens cold shock domain protein... 36 0.12
M24069-1|AAA35749.1| 412|Homo sapiens protein ( Human DNA-bindi... 36 0.12
L29071-1|AAA79243.1| 342|Homo sapiens DNA-binding protein A pro... 36 0.12
BC021926-1|AAH21926.1| 372|Homo sapiens cold shock domain prote... 36 0.12
BC015913-1|AAH15913.1| 303|Homo sapiens CSDA protein protein. 36 0.12
BC015564-1|AAH15564.1| 372|Homo sapiens cold shock domain prote... 36 0.12
BC009744-1|AAH09744.1| 303|Homo sapiens CSDA protein protein. 36 0.12
BC008801-1|AAH08801.1| 372|Homo sapiens cold shock domain prote... 36 0.12
AB209896-1|BAD93133.1| 134|Homo sapiens CSDA protein variant pr... 36 0.12
M85234-1|AAA36569.1| 322|Homo sapiens nuclease sensitive elemen... 31 4.6
M83234-1|AAA59949.1| 320|Homo sapiens DNA-binding protein protein. 31 4.6
M24070-1|AAA35750.1| 364|Homo sapiens protein ( Human DNA-bindi... 31 4.6
L28809-1|AAA20871.1| 324|Homo sapiens protein ( Homo sapiens db... 31 4.6
J03827-1|AAA61308.1| 317|Homo sapiens NFYA protein. 31 4.6
DQ120685-1|ABB92460.1| 319|Homo sapiens rcNSEP1 protein. 31 4.6
BC106045-1|AAI06046.1| 324|Homo sapiens Y box binding protein 1... 31 4.6
BC098435-1|AAH98435.1| 324|Homo sapiens Y box binding protein 1... 31 4.6
BC090038-1|AAH90038.1| 324|Homo sapiens Y box binding protein 1... 31 4.6
BC072014-1|AAH72014.1| 266|Homo sapiens YBX1 protein protein. 31 4.6
BC071708-1|AAH71708.1| 324|Homo sapiens Y box binding protein 1... 31 4.6
BC070084-1|AAH70084.1| 324|Homo sapiens Y box binding protein 1... 31 4.6
BC065571-1|AAH65571.1| 324|Homo sapiens Y box binding protein 1... 31 4.6
BC038384-1|AAH38384.1| 324|Homo sapiens Y box binding protein 1... 31 4.6
BC018393-1|AAH18393.1| 267|Homo sapiens Unknown (protein for IM... 31 4.6
BC015208-1|AAH15208.1| 324|Homo sapiens Y box binding protein 1... 31 4.6
BC010430-1|AAH10430.1| 324|Homo sapiens Y box binding protein 1... 31 4.6
BC002411-1|AAH02411.1| 324|Homo sapiens Y box binding protein 1... 31 4.6
BC000064-1|AAH00064.1| 266|Homo sapiens YBX1 protein protein. 31 4.6
>X95325-1|CAA64631.1| 372|Homo sapiens DNA-binding protein protein.
Length = 372
Score = 35.9 bits (79), Expect = 0.12
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD+RR Y R Y+ R R
Sbjct: 160 PDGVPVEGSRYAADRRR-YRRGYYGRRR 186
>X72712-1|CAA51261.1| 372|Homo sapiens cold shock domain protein A
protein.
Length = 372
Score = 35.9 bits (79), Expect = 0.12
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD+RR Y R Y+ R R
Sbjct: 160 PDGVPVEGSRYAADRRR-YRRGYYGRRR 186
>M24069-1|AAA35749.1| 412|Homo sapiens protein ( Human DNA-binding
protein A (dbpA) gene, 3' end. ).
Length = 412
Score = 35.9 bits (79), Expect = 0.12
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD+RR Y R Y+ R R
Sbjct: 230 PDGVPVEGSRYAADRRR-YRRGYYGRRR 256
>L29071-1|AAA79243.1| 342|Homo sapiens DNA-binding protein A
protein.
Length = 342
Score = 35.9 bits (79), Expect = 0.12
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD+RR Y R Y+ R R
Sbjct: 160 PDGVPVEGSRYAADRRR-YRRGYYGRRR 186
>BC021926-1|AAH21926.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 35.9 bits (79), Expect = 0.12
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD+RR Y R Y+ R R
Sbjct: 160 PDGVPVEGSRYAADRRR-YRRGYYGRRR 186
>BC015913-1|AAH15913.1| 303|Homo sapiens CSDA protein protein.
Length = 303
Score = 35.9 bits (79), Expect = 0.12
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD+RR Y R Y+ R R
Sbjct: 160 PDGVPVEGSRYAADRRR-YRRGYYGRRR 186
>BC015564-1|AAH15564.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 35.9 bits (79), Expect = 0.12
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD+RR Y R Y+ R R
Sbjct: 160 PDGVPVEGSRYAADRRR-YRRGYYGRRR 186
>BC009744-1|AAH09744.1| 303|Homo sapiens CSDA protein protein.
Length = 303
Score = 35.9 bits (79), Expect = 0.12
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD+RR Y R Y+ R R
Sbjct: 160 PDGVPVEGSRYAADRRR-YRRGYYGRRR 186
>BC008801-1|AAH08801.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 35.9 bits (79), Expect = 0.12
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD+RR Y R Y+ R R
Sbjct: 160 PDGVPVEGSRYAADRRR-YRRGYYGRRR 186
>AB209896-1|BAD93133.1| 134|Homo sapiens CSDA protein variant
protein.
Length = 134
Score = 35.9 bits (79), Expect = 0.12
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD+RR Y R Y+ R R
Sbjct: 93 PDGVPVEGSRYAADRRR-YRRGYYGRRR 119
>M85234-1|AAA36569.1| 322|Homo sapiens nuclease sensitive element
binding protein-1 protein.
Length = 322
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 127 PGGVPVQGSKYAAD--RNHYRRY-PRRR 151
>M83234-1|AAA59949.1| 320|Homo sapiens DNA-binding protein protein.
Length = 320
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 125 PGGVPVQGSKYAAD--RNHYRRY-PRRR 149
>M24070-1|AAA35750.1| 364|Homo sapiens protein ( Human DNA-binding
protein B (dbpB) gene, 3' end. ).
Length = 364
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 168 PGGVPVQGSKYAAD--RNHYRRY-PRRR 192
>L28809-1|AAA20871.1| 324|Homo sapiens protein ( Homo sapiens
dbpB-like protein mRNA, complete cds. ).
Length = 324
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 128 PGGVPVQGSKYAAD--RNHYRRY-PRRR 152
>J03827-1|AAA61308.1| 317|Homo sapiens NFYA protein.
Length = 317
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 128 PGGVPVQGSKYAAD--RNHYRRY-PRRR 152
>DQ120685-1|ABB92460.1| 319|Homo sapiens rcNSEP1 protein.
Length = 319
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 124 PGGVPVQGSKYAAD--RNHYRRY-PRPR 148
>BC106045-1|AAI06046.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 128 PGGVPVQGSKYAAD--RNHYRRY-PRRR 152
>BC098435-1|AAH98435.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 128 PGGVPVQGSKYAAD--RNHYRRY-PRRR 152
>BC090038-1|AAH90038.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 128 PGGVPVQGSKYAAD--RNHYRRY-PRRR 152
>BC072014-1|AAH72014.1| 266|Homo sapiens YBX1 protein protein.
Length = 266
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 128 PGGVPVQGSKYAAD--RNHYRRY-PRRR 152
>BC071708-1|AAH71708.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 128 PGGVPVQGSKYAAD--RNHYRRY-PRRR 152
>BC070084-1|AAH70084.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 128 PGGVPVQGSKYAAD--RNHYRRY-PRRR 152
>BC065571-1|AAH65571.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 128 PGGVPVQGSKYAAD--RNHYRRY-PRRR 152
>BC038384-1|AAH38384.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 128 PGGVPVQGSKYAAD--RNHYRRY-PRRR 152
>BC018393-1|AAH18393.1| 267|Homo sapiens Unknown (protein for
IMAGE:3882730) protein.
Length = 267
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 128 PGGVPVQGSKYAAD--RNHYRRY-PRRR 152
>BC015208-1|AAH15208.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 128 PGGVPVQGSKYAAD--RNHYRRY-PRRR 152
>BC010430-1|AAH10430.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 128 PGGVPVQGSKYAAD--RNHYRRY-PRRR 152
>BC002411-1|AAH02411.1| 324|Homo sapiens Y box binding protein 1
protein.
Length = 324
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 128 PGGVPVQGSKYAAD--RNHYRRY-PRRR 152
>BC000064-1|AAH00064.1| 266|Homo sapiens YBX1 protein protein.
Length = 266
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 12 PXGEPVKGSPYAADKRRGYHRQYFPRSR 95
P G PV+GS YAAD R ++R+Y PR R
Sbjct: 128 PGGVPVQGSKYAAD--RNHYRRY-PRRR 152
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,314,407
Number of Sequences: 237096
Number of extensions: 1700643
Number of successful extensions: 4319
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 4136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4319
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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