Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_A02
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39471-1|AAA80132.4|  461|Caenorhabditis elegans Intestinal acid...    28   4.9  
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ...    27   8.6  

>U39471-1|AAA80132.4|  461|Caenorhabditis elegans Intestinal acid
           phosphatase protein4 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 211 ISAQFFPSQFSRWTPWGRSWPNEXRRVPPSAXAQFPGGAG 330
           I  Q++P+QF ++TPW      E   +  S    F  G G
Sbjct: 236 IEKQYYPAQFKQFTPWYTDSLFEQIDIVNSQVQDFQNGLG 275


>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 211 WYNASFLTLISLCTPLVGR 155
           W NASFLTL++   P++G+
Sbjct: 371 WQNASFLTLLNELEPVLGK 389


>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 211 WYNASFLTLISLCTPLVGR 155
           W NASFLTL++   P++G+
Sbjct: 371 WQNASFLTLLNELEPVLGK 389


>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
           protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 211 WYNASFLTLISLCTPLVGR 155
           W NASFLTL++   P++G+
Sbjct: 371 WQNASFLTLLNELEPVLGK 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,589,010
Number of Sequences: 27780
Number of extensions: 231470
Number of successful extensions: 638
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)