Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_A01
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    29   0.31 
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    29   0.31 
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   2.9  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            25   3.8  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    25   3.8  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    25   5.0  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   6.7  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    24   8.8  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
 Frame = +2

Query: 194 RLPCTPWLIT----DKEKAXKLKQSLPPGL 271
           +L C+ +L T    D +KA KL+QSLPP L
Sbjct: 36  KLRCSKYLYTLVVADAKKAEKLRQSLPPDL 65


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
 Frame = +2

Query: 194 RLPCTPWLIT----DKEKAXKLKQSLPPGL 271
           +L C+ +L T    D +KA KL+QSLPP L
Sbjct: 36  KLRCSRYLYTLVVADAKKAEKLRQSLPPAL 65


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 178 GFDCSTASLYTLAHH*QREG 237
           GFD  T+ LY LA   +REG
Sbjct: 511 GFDLLTSKLYALASRIEREG 530


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +2

Query: 41  NYSVFNTARAETQTISTRLFNLT-ATEERRQTPVKINEEPCRMSTFKASTAQRL 199
           N  VF     +   +    F  +  TEE++   V+  +EP    T K S  Q+L
Sbjct: 118 NEIVFGDKFGDVYCVDENWFTTSEVTEEKKSNVVEGKQEPVNNDTLKDSKLQKL 171


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -2

Query: 261 GKLCLSXSAFSLSVMSQGVQGSR*AVEALNVDILQGSSFILTGVWRLSSVAVKLKSRV 88
           GK+C     F  S  +QG       V  +N+D++  S+  + G   + +  V+ + RV
Sbjct: 261 GKICRQKKVFFHSDAAQGYGKIDIDVNRMNIDLMSISAHKIYGPKGIGAAYVRRRPRV 318


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 121 KTPNSRQNKRRTLQN 165
           KTP    NKRRTL+N
Sbjct: 111 KTPRLSSNKRRTLKN 125


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 201 PVHPGSSLTKRRLXNLSRVYLQVSKLKK*SDVTRLK 308
           P  P SS       N   +YL ++ LKK   V RL+
Sbjct: 168 PATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRLR 203


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 71  ETQTISTRLFNLTATEERRQ 130
           ETQT+    + L  TEE RQ
Sbjct: 360 ETQTLFEETYGLKTTEEERQ 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,172,520
Number of Sequences: 5004
Number of extensions: 20366
Number of successful extensions: 48
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)