Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_A01
         (373 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     33   0.072
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    33   0.072
05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     33   0.095
10_08_0713 + 20077967-20078290,20078434-20078814                       28   2.7  
11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558     27   4.7  

>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 33.1 bits (72), Expect = 0.072
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +2

Query: 161 RMSTFKASTAQRLPCTPWLIT----DKEKAXKLKQSLPPGL 271
           R+   K +   ++ C+ +L T    D +KA KLKQSLPPGL
Sbjct: 24  RIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLPPGL 64


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 33.1 bits (72), Expect = 0.072
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +2

Query: 161 RMSTFKASTAQRLPCTPWLIT----DKEKAXKLKQSLPPGL 271
           R+   K +   ++ C+ +L T    D +KA KLKQSLPPGL
Sbjct: 54  RIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLPPGL 94


>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 32.7 bits (71), Expect = 0.095
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +2

Query: 161 RMSTFKASTAQRLPCTPWLIT----DKEKAXKLKQSLPPGL 271
           R+   K +   ++ C+ +L T    D +KA KLKQSLPPGL
Sbjct: 24  RIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSLPPGL 64


>10_08_0713 + 20077967-20078290,20078434-20078814
          Length = 234

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 14  TPLTAAWLENYSVFNTARAETQTI 85
           TPL AAWLE +   + A+A  Q +
Sbjct: 190 TPLLAAWLERFGELDAAKAVLQDV 213


>11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558
          Length = 852

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 174 SRLRLLNGFPVHPGSSLTKRRLXNLSRVYLQVSKLKK*SDVTRLKK 311
           SRL LL    +     L +R L N+  +YL      + +DVTRL K
Sbjct: 500 SRLGLLKVLDLDGCKGLKRRHLKNICGIYLLKYLSLRDTDVTRLPK 545


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,714,126
Number of Sequences: 37544
Number of extensions: 131672
Number of successful extensions: 348
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)