Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_A01
         (373 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   3.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   8.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   8.2  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +3

Query: 207 HPGSSLTKRRL 239
           H GSSLTK RL
Sbjct: 137 HSGSSLTKSRL 147


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = +2

Query: 35   LENYSVFNTARAETQTISTRLFNLTATEERRQTPVKINEE 154
            L  +SV ++A++   + ++ + N+T        PVK+  +
Sbjct: 936  LSGHSVLHSAQSVVASSASNVTNVTTNLTTILPPVKVQSQ 975


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 157 LQNVNVQGFDCSTASL 204
           LQ+ N+ GFD   ASL
Sbjct: 255 LQSENIPGFDDYMASL 270


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 157 LQNVNVQGFDCSTASL 204
           LQ+ N+ GFD   ASL
Sbjct: 345 LQSENIPGFDDYMASL 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,880
Number of Sequences: 438
Number of extensions: 1277
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)