Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P24
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    64   2e-11
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    29   0.44 
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    28   1.4  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    26   4.1  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   4.1  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   5.5  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      26   5.5  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    25   7.2  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   9.5  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    25   9.5  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    25   9.5  
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr...    25   9.5  

>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 33/148 (22%), Positives = 72/148 (48%), Gaps = 2/148 (1%)
 Frame = +1

Query: 142 NVDRTVDISTQLVKVVSKIVLENSGKSPVKHFLFAVEEAAKNNLXFIGA--KDSNSKDLR 315
           N  RT+D+ +   K ++ +++ N G  P   + +  + +   ++  +    K+   K   
Sbjct: 26  NAIRTIDLRSTYTKTLTSLIIVNEGDEPQNTYRYFQQTSPGESVLSLSVSIKEEEKKGTN 85

Query: 316 LAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVG 495
             +     YD      + L+ P+  G +  ++++      ++P P A+ Q E+Q++ Y+ 
Sbjct: 86  PIKVNNNVYD------IPLQPPVKPGESRTLLIQAGLDGGVRPLPAAVDQDEEQYLVYLT 139

Query: 496 NLYTYSPYYTSTQKTSVILNTKTVESFT 579
            LY  SPY T  Q+T +IL +  ++++T
Sbjct: 140 TLYLDSPYTTDLQRTRLILPSAKIDTYT 167


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
 Frame = +1

Query: 157  VDISTQLVKVVSKIVLENSGKSPVKH-----FLFAVEEAAKNNLXFIGAKDSNSKDLRLA 321
            VD+ +QL++++ KIVL+ S  S   +     FL A++      + +I   D    D  +A
Sbjct: 994  VDLPSQLIELLEKIVLQPSSFSENANLQNLLFLTAIKADKSRVMEYIDKLDKYDVD-EIA 1052

Query: 322  ETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQE 471
            E  ++   Y + +R+      +  A   +V + V     Q Y   + Q E
Sbjct: 1053 EIAIENGLYEEAFRIYKIHNKHEQAMKVLVEDIVSLDRAQDYAETVEQPE 1102


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 233 CFTGDLPLFSKTIFDTTFTSWVD 165
           C  G+LP FSKT ++ T  + +D
Sbjct: 884 CVVGELPFFSKTCYNATVVAELD 906


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 257 ASSTAKRKCFTGDLPLFSKTIFDTTFTSW 171
           A++T  R  F G  PLFS+ +F      W
Sbjct: 433 AANTFTRSIFAGTFPLFSEIMFKKLGVHW 461


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +1

Query: 97  LVQAWTQLSSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKSPVKHFLFAVEEA 258
           L   W  LSS + L      +++   LVK++SKIV+  S  +    F F  E++
Sbjct: 7   LYSIWVVLSSFVILSAYQ--LEVRKFLVKLLSKIVIGASESNVASFFAFVSEKS 58


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = +1

Query: 121  SSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKS 222
            SSDI   N+D T DISTQ     S +   NSG S
Sbjct: 1303 SSDIPKANIDFTNDISTQNTFPASPV--SNSGFS 1334


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 504 IQIANIFHKLVFLLSYSCRIW 442
           + IA +F  L+F +S+ C IW
Sbjct: 277 VVIAFVFLSLIFFISFICPIW 297


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 271 LXFIGAKDSNSKDLRLAETTVKGYDYVKFWRV 366
           L  + A ++  +DLR+ + TVK   Y + W V
Sbjct: 335 LWIVLALNNTIRDLRIRKQTVKAQMYTRLWIV 366


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 408 CCRNCVHQSFTTISDS 455
           CCRNCV +S T   +S
Sbjct: 483 CCRNCVERSTTWFIES 498


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 91  KPLVQAWTQLSSDIKLKNVDRTVDISTQLVKVVSKIVLENSGK 219
           K L+  WT++   +     DR V     L  V  KI  +++GK
Sbjct: 98  KALIACWTRVDMKLTKHQFDRKVQTYKNLDTVWEKIHHDSTGK 140


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 285 SNKR*IILRSFF-NRKKKMFYWRFATVLQDYF*YYFYEL 172
           SN+  ++ +SF  N + K F W F  ++     YYF  L
Sbjct: 48  SNRNRVVYKSFQPNPRDKRFQWIFGALIAGGGVYYFTHL 86


>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = -2

Query: 233 CFTGDLPLFSKTIFDTTFTSWVDISTV---RSTFFNFISLDSCVHACTKGL 90
           C    L L   T F  T+T  V ++ +   +      I L  CV AC KG+
Sbjct: 117 CLVCTLALIFLTYFYETWTKAVKVTVISLAKCVKVTAIFLAQCVKACGKGI 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,349
Number of Sequences: 5004
Number of extensions: 59902
Number of successful extensions: 180
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)