Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P24
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976...    85   4e-17
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     32   0.46 
07_03_1280 + 25434933-25436153                                         29   3.2  
10_08_0819 - 20803992-20804493,20804578-20804759,20804849-208049...    28   5.6  
05_07_0074 - 27509124-27509199,27509613-27512143                       28   7.5  

>05_03_0387 +
           13396158-13396271,13396390-13396434,13397004-13397632,
           13397727-13397874,13397971-13398147,13398527-13398595,
           13398699-13398788,13399000-13399158,13399663-13399753,
           13399917-13400008,13400009-13400233,13400394-13400585
          Length = 676

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 7/160 (4%)
 Frame = +1

Query: 124 SDIKLKNVDRTVDISTQLVKVVSKIVLENSGKSPVKHFLFAVEEAAKNNLXFIGAKDSNS 303
           +D+ +   DR VD+++ +V+V++ + +ENSG   V  FL A       NL  I A  +  
Sbjct: 28  ADLVVTRADRKVDLTSHIVRVLTSLKVENSGPEAVSQFLLAFPNVQAKNLAAIRAFGTEE 87

Query: 304 KD------LRLAETTVKGYD-YVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAIT 462
           K       L +      G    + F+   L +PL  G T+++ V TVFT ++QP+P  IT
Sbjct: 88  KVKGPSMVLPIEVVQPSGVPPELTFFSASLSKPLEKGKTLHLDVLTVFTHSVQPFPEEIT 147

Query: 463 QQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTK 582
           Q E Q V Y  +    SPY    Q  S+ L    VES+TK
Sbjct: 148 QAESQLVVYQDSAQYLSPYPVKVQTLSIRLPGGRVESYTK 187


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 15/62 (24%), Positives = 34/62 (54%)
 Frame = +1

Query: 160  DISTQLVKVVSKIVLENSGKSPVKHFLFAVEEAAKNNLXFIGAKDSNSKDLRLAETTVKG 339
            ++S + ++    I  E+  +    H      E+++N++ F   +D+N  DL +A++ ++G
Sbjct: 1021 NVSLESLETTENITSEDENEIKAGHLC----ESSENDIRFPEKEDTNKIDLEVADSVMEG 1076

Query: 340  YD 345
            YD
Sbjct: 1077 YD 1078


>07_03_1280 + 25434933-25436153
          Length = 406

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 254 SSTAKRKCFTGDLPLFSKTIFDTTFTSWVD 165
           SS  +    TGDLP  S T+FD++  +W D
Sbjct: 159 SSPYRVVLITGDLPDLSMTVFDSSKNAWDD 188


>10_08_0819 -
           20803992-20804493,20804578-20804759,20804849-20804911,
           20805736-20805846,20806668-20806721,20807040-20807075,
           20807356-20807400,20807473-20807562,20807863-20808195
          Length = 471

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 443 GCKALVNTVSTTTFTVAPAFRGSLSSTRQNLT*S*PFT 330
           GC AL+   S T+F      RG++S  R + +   PFT
Sbjct: 364 GCHALIRRTSNTSFARDQICRGNVSGLRMSKSAIIPFT 401


>05_07_0074 - 27509124-27509199,27509613-27512143
          Length = 868

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 419 VSTTTFTVAPAFRGSLSSTRQNLT 348
           ++ ++ T+AP FRGSLS  + N T
Sbjct: 405 IAASSNTIAPYFRGSLSGLKYNYT 428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,748,628
Number of Sequences: 37544
Number of extensions: 341282
Number of successful extensions: 763
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)