Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P24
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54864| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_11498| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)                     30   1.9  
SB_34102| Best HMM Match : Kelch_1 (HMM E-Value=0)                     29   2.5  
SB_737| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-35)                   29   2.5  
SB_49966| Best HMM Match : Neur_chan_memb (HMM E-Value=0.064)          28   5.8  
SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)          28   7.6  
SB_19819| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_6057| Best HMM Match : ig (HMM E-Value=7.3e-06)                     28   7.6  

>SB_54864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 24/66 (36%), Positives = 43/66 (65%)
 Frame = +1

Query: 385 NAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKT 564
           ++G +V+V VE VF  A++P+P  + Q +   V + GN YT++ Y +  Q T++ L++  
Sbjct: 83  SSGGSVDVSVEEVFAHAMKPFPAKVAQSDKHQVLFTGNHYTFAVYKSKQQSTTITLSSSN 142

Query: 565 VESFTK 582
           +ES+TK
Sbjct: 143 IESYTK 148



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 26/69 (37%), Positives = 40/69 (57%)
 Frame = +1

Query: 118 LSSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKSPVKHFLFAVEEAAKNNLXFIGAKDS 297
           ++ D+ L    R +D+S+QLVKV + I L+N G  PV  F FAV+ +  +NL  + A   
Sbjct: 26  INHDLVLSKASRKIDLSSQLVKVSTSITLDNGGNQPVDSFHFAVDPSVADNLALLSASSG 85

Query: 298 NSKDLRLAE 324
            S D+ + E
Sbjct: 86  GSVDVSVEE 94



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 581 RVKPFSQVDGTIIYGPYANVGPF 649
           ++KP SQ D TI  GPY++V  F
Sbjct: 148 KLKPSSQSDNTITLGPYSDVDAF 170


>SB_11498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +1

Query: 202 LENSGKSPVKHFLFAVEEAAKNNLXFIGAKDSNSKDLRLAETTVKGY---DYVKFWRVEL 372
           LEN G  PVKH        AK  L    AKD N K L    + ++G    + ++ +R EL
Sbjct: 8   LENLGAKPVKHVTSQKHLRAKAILEKDKAKDQNIKTLLSKHSNIQGSTLPEEMRLYRYEL 67

Query: 373 KE-PLNAG 393
            E  L AG
Sbjct: 68  VEIMLKAG 75


>SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)
          Length = 875

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 1/173 (0%)
 Frame = +1

Query: 19  REMRLPGNWRSYNLRFFSYCF*RYKPLVQAWTQLSSDIKLKNVDRTVDISTQLVKVVSKI 198
           R ++L  NW +  +  +S+   +    V  +         +  +R   + T L  +VS+ 
Sbjct: 316 RGLQLLSNWTAQVMELYSW---KLLHPVDKYANPQCPDDAEEYERLYMVRTMLESIVSEK 372

Query: 199 VLENSGKSPVKHFLFAVEEAAKNNLXFIGAKDSNSKDLRLAETTVKGYDYVKFWRVELKE 378
             +   K   K  + A+E   KN+  F       S  LR  E   +  D  + W  E   
Sbjct: 373 GAKKMRKDLDKEHIDAIETFLKNSFFF-------SDLLRFGEVLRECCDLSQLWFREFYL 425

Query: 379 PLNAGATVNVVVETVFTKALQPYPTAITQQE-DQFVKYVGNLYTYSPYYTSTQ 534
            L  GA +   +E      L  +     +    ++V Y  +LY  S +Y  T+
Sbjct: 426 ELTMGARIQFPIEMSLPWILTNHILESKEPSMMEYVLYPLDLYNDSAHYALTE 478


>SB_34102| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 628

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 230 FTGDLPLFSKTIFDTTFTSWVDISTVRSTFFNF--ISLDSCVHA 105
           F G +PL +   FD     W+++S +    F      LD+CV+A
Sbjct: 369 FDGSMPLNTAEFFDPKVGRWIEVSRMNHCRFGVGCAVLDTCVYA 412


>SB_737| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-35)
          Length = 432

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -2

Query: 176 SWVDISTVRSTFFNFISLDSCVHACTKGLYRQKQYEKKRKL*LRQLPGNLISR 18
           +W+++ TV   F N  ++D  ++      YR+  Y    K+ L +LP   +SR
Sbjct: 334 AWIELITVMLAFTNQ-AIDPVIYGFCNTQYRRAMYRLTYKVFLNKLPSLTLSR 385


>SB_49966| Best HMM Match : Neur_chan_memb (HMM E-Value=0.064)
          Length = 100

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 185 TFTSWVDISTVRSTFFNFISLDSCVHACTKGLYRQKQYEKKRK 57
           ++   VD   + S FF F+SL  CV      L R+ Q EKK+K
Sbjct: 41  SYPKGVDWYLMTSFFFVFMSLVECVVVDRLLLKRKAQEEKKKK 83


>SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +3

Query: 327 HCERL*LC*ILACGAQGTPKRRCHSKCCCRN---CVHQ--SFTTI-SDSYNSARRPVCEI 488
           HC     C   +C   G   + C +KC C+N   CV++   FT I S  +N     +CE 
Sbjct: 104 HCVDAYKCFRCSCDGTGYYGQTCQNKCPCKNGGHCVNKVDGFTCICSPGFNG---KLCEN 160

Query: 489 CW 494
            W
Sbjct: 161 IW 162


>SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +3

Query: 327 HCERL*LC*ILACGAQGTPKRRCHSKCCCRN---CVHQ--SFTTI-SDSYNSARRPVCEI 488
           HC     C   +C   G   + C +KC C+N   CV++   FT I S  +N     +CE 
Sbjct: 104 HCVDAYKCFRCSCDGTGYYGQTCQNKCPCKNGGHCVNKVDGFTCICSPGFNG---KLCEN 160

Query: 489 CW 494
            W
Sbjct: 161 IW 162


>SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)
          Length = 428

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 179 TSWVDISTVRSTFFNFISLDSCV 111
           T+WVD   +R  F+ +ISL  CV
Sbjct: 348 TAWVDQIAMRLEFYGWISLTQCV 370


>SB_19819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 518 YGEYVYKLPTYFTNWSSC 465
           YGE++  LPTY+T  S+C
Sbjct: 225 YGEHMQPLPTYYTMESTC 242


>SB_6057| Best HMM Match : ig (HMM E-Value=7.3e-06)
          Length = 814

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
 Frame = +1

Query: 295 SNSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVE---TVFTKALQPYPTAITQ 465
           + S  + +   T+ GY + +  R  L   LNA    ++ +E   TV    + P P ++  
Sbjct: 325 NTSTTVAIGNCTLSGYTFTRHPRFNLDLELNATGAESIGLEYNTTVGVSTILPSPYSL-- 382

Query: 466 QEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKGEAFLTS 603
           +   FV    +LYT +   T     + I ++     FT     L S
Sbjct: 383 ETTDFVSITPHLYTSA---TKLPTDATIASSTFAAIFTPSPTILAS 425


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,282,671
Number of Sequences: 59808
Number of extensions: 439368
Number of successful extensions: 1201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)