Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_P24
(654 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y00281-1|CAA68392.1| 607|Homo sapiens protein ( Human mRNA for ... 116 1e-25
CR456742-1|CAG33023.1| 607|Homo sapiens RPN1 protein. 116 1e-25
BC010839-1|AAH10839.1| 607|Homo sapiens ribophorin I protein. 116 1e-25
AK223595-1|BAD97315.1| 607|Homo sapiens ribophorin I variant pr... 113 4e-25
BC007995-1|AAH07995.1| 568|Homo sapiens Similar to ribophorin I... 109 6e-24
X95486-1|CAA64752.1| 1640|Homo sapiens clathrin heavy chain poly... 30 8.3
U60803-1|AAB40909.1| 1569|Homo sapiens clathrin heavy chain 2 pr... 30 8.3
U60802-1|AAB40908.1| 1626|Homo sapiens clathrin heavy chain 2 pr... 30 8.3
U41763-1|AAC50494.1| 1640|Homo sapiens muscle clathrin heavy cha... 30 8.3
BC019895-1|AAH19895.1| 373|Homo sapiens FBLIM1 protein protein. 30 8.3
AY180161-1|AAO49012.1| 373|Homo sapiens migfilin protein. 30 8.3
AL450998-6|CAH70854.1| 373|Homo sapiens filamin binding LIM pro... 30 8.3
AL450998-5|CAH70853.1| 276|Homo sapiens filamin binding LIM pro... 30 8.3
AL133035-1|CAB61365.1| 200|Homo sapiens hypothetical protein pr... 30 8.3
AK027444-1|BAB55115.1| 276|Homo sapiens protein ( Homo sapiens ... 30 8.3
AF459643-1|AAO15549.1| 374|Homo sapiens filamin-binding LIM pro... 30 8.3
>Y00281-1|CAA68392.1| 607|Homo sapiens protein ( Human mRNA for
ribophorin I. ).
Length = 607
Score = 116 bits (278), Expect = 1e-25
Identities = 66/155 (42%), Positives = 93/155 (60%), Gaps = 7/155 (4%)
Frame = +1
Query: 139 KNVDRTVDISTQLVKVVSKIVLENSG---KSPVKHFLFAVEEAAKNNLXFIGAK----DS 297
++V RTVD+S+ L KV +++VL + G S FL A+E + L +G + D
Sbjct: 34 EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93
Query: 298 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 477
+L + ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E Q
Sbjct: 94 EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152
Query: 478 FVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTK 582
FV + GN Y YSPY T TQ V L ++ VES+TK
Sbjct: 153 FVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTK 187
>CR456742-1|CAG33023.1| 607|Homo sapiens RPN1 protein.
Length = 607
Score = 116 bits (278), Expect = 1e-25
Identities = 66/155 (42%), Positives = 93/155 (60%), Gaps = 7/155 (4%)
Frame = +1
Query: 139 KNVDRTVDISTQLVKVVSKIVLENSG---KSPVKHFLFAVEEAAKNNLXFIGAK----DS 297
++V RTVD+S+ L KV +++VL + G S FL A+E + L +G + D
Sbjct: 34 EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93
Query: 298 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 477
+L + ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E Q
Sbjct: 94 EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152
Query: 478 FVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTK 582
FV + GN Y YSPY T TQ V L ++ VES+TK
Sbjct: 153 FVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTK 187
>BC010839-1|AAH10839.1| 607|Homo sapiens ribophorin I protein.
Length = 607
Score = 116 bits (278), Expect = 1e-25
Identities = 66/155 (42%), Positives = 93/155 (60%), Gaps = 7/155 (4%)
Frame = +1
Query: 139 KNVDRTVDISTQLVKVVSKIVLENSG---KSPVKHFLFAVEEAAKNNLXFIGAK----DS 297
++V RTVD+S+ L KV +++VL + G S FL A+E + L +G + D
Sbjct: 34 EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93
Query: 298 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 477
+L + ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E Q
Sbjct: 94 EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152
Query: 478 FVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTK 582
FV + GN Y YSPY T TQ V L ++ VES+TK
Sbjct: 153 FVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTK 187
>AK223595-1|BAD97315.1| 607|Homo sapiens ribophorin I variant
protein.
Length = 607
Score = 113 bits (273), Expect = 4e-25
Identities = 65/155 (41%), Positives = 92/155 (59%), Gaps = 7/155 (4%)
Frame = +1
Query: 139 KNVDRTVDISTQLVKVVSKIVLENSG---KSPVKHFLFAVEEAAKNNLXFIGAK----DS 297
++V RTVD+S+ L KV +++VL + G S FL A+E + L +G + D
Sbjct: 34 EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93
Query: 298 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 477
+L + ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E Q
Sbjct: 94 EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152
Query: 478 FVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTK 582
FV + GN Y Y PY T TQ V L ++ VES+TK
Sbjct: 153 FVVFEGNHYFYPPYPTKTQTMRVKLASRNVESYTK 187
>BC007995-1|AAH07995.1| 568|Homo sapiens Similar to ribophorin I
protein.
Length = 568
Score = 109 bits (263), Expect = 6e-24
Identities = 63/149 (42%), Positives = 88/149 (59%), Gaps = 7/149 (4%)
Frame = +1
Query: 157 VDISTQLVKVVSKIVLENSG---KSPVKHFLFAVEEAAKNNLXFIGAK----DSNSKDLR 315
VD+S+ L KV +++VL + G S FL A+E + L +G + D +L
Sbjct: 1 VDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDEEENNLE 60
Query: 316 LAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVG 495
+ ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E QFV + G
Sbjct: 61 VRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEG 119
Query: 496 NLYTYSPYYTSTQKTSVILNTKTVESFTK 582
N Y YSPY T TQ V L ++ VES+TK
Sbjct: 120 NHYFYSPYPTKTQTMRVKLASRNVESYTK 148
>X95486-1|CAA64752.1| 1640|Homo sapiens clathrin heavy chain
polypeptide protein.
Length = 1640
Score = 29.9 bits (64), Expect = 8.3
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Frame = +1
Query: 154 TVDISTQLVKVVSKIVLENSGKSPVKH-----FLFAVEEAAKNNLXFIGAKDSNSKDLRL 318
T D+ +L++++ KIVL+NS S ++ L A++ + +I D N L +
Sbjct: 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYISRLD-NYDALDI 1055
Query: 319 AETTVKGYDYVKFWRVELKEPLNAGATVNVVVETV 423
A V Y + + V K +NA A + V++E +
Sbjct: 1056 ASIAVSSALYEEAFTVFHKFDMNASA-IQVLIEHI 1089
>U60803-1|AAB40909.1| 1569|Homo sapiens clathrin heavy chain 2
protein.
Length = 1569
Score = 29.9 bits (64), Expect = 8.3
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Frame = +1
Query: 154 TVDISTQLVKVVSKIVLENSGKSPVKH-----FLFAVEEAAKNNLXFIGAKDSNSKDLRL 318
T D+ +L++++ KIVL+NS S ++ L A++ + +I D N L +
Sbjct: 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYISRLD-NYDALDI 1055
Query: 319 AETTVKGYDYVKFWRVELKEPLNAGATVNVVVETV 423
A V Y + + V K +NA A + V++E +
Sbjct: 1056 ASIAVSSALYEEAFTVFHKFDMNASA-IQVLIEHI 1089
>U60802-1|AAB40908.1| 1626|Homo sapiens clathrin heavy chain 2
protein.
Length = 1626
Score = 29.9 bits (64), Expect = 8.3
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Frame = +1
Query: 154 TVDISTQLVKVVSKIVLENSGKSPVKH-----FLFAVEEAAKNNLXFIGAKDSNSKDLRL 318
T D+ +L++++ KIVL+NS S ++ L A++ + +I D N L +
Sbjct: 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYISRLD-NYDALDI 1055
Query: 319 AETTVKGYDYVKFWRVELKEPLNAGATVNVVVETV 423
A V Y + + V K +NA A + V++E +
Sbjct: 1056 ASIAVSSALYEEAFTVFHKFDMNASA-IQVLIEHI 1089
>U41763-1|AAC50494.1| 1640|Homo sapiens muscle clathrin heavy chain
protein.
Length = 1640
Score = 29.9 bits (64), Expect = 8.3
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Frame = +1
Query: 154 TVDISTQLVKVVSKIVLENSGKSPVKH-----FLFAVEEAAKNNLXFIGAKDSNSKDLRL 318
T D+ +L++++ KIVL+NS S ++ L A++ + +I D N L +
Sbjct: 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYISRLD-NYDALDI 1055
Query: 319 AETTVKGYDYVKFWRVELKEPLNAGATVNVVVETV 423
A V Y + + V K +NA A + V++E +
Sbjct: 1056 ASIAVSSALYEEAFTVFHKFDMNASA-IQVLIEHI 1089
>BC019895-1|AAH19895.1| 373|Homo sapiens FBLIM1 protein protein.
Length = 373
Score = 29.9 bits (64), Expect = 8.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 384 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 497
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237
>AY180161-1|AAO49012.1| 373|Homo sapiens migfilin protein.
Length = 373
Score = 29.9 bits (64), Expect = 8.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 384 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 497
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237
>AL450998-6|CAH70854.1| 373|Homo sapiens filamin binding LIM
protein 1 protein.
Length = 373
Score = 29.9 bits (64), Expect = 8.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 384 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 497
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237
>AL450998-5|CAH70853.1| 276|Homo sapiens filamin binding LIM
protein 1 protein.
Length = 276
Score = 29.9 bits (64), Expect = 8.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 384 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 497
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 104 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 140
>AL133035-1|CAB61365.1| 200|Homo sapiens hypothetical protein
protein.
Length = 200
Score = 29.9 bits (64), Expect = 8.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 384 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 497
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 28 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 64
>AK027444-1|BAB55115.1| 276|Homo sapiens protein ( Homo sapiens
cDNA FLJ14538 fis, clone NT2RM2001324, weakly similar to
ZYXIN. ).
Length = 276
Score = 29.9 bits (64), Expect = 8.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 384 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 497
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 104 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 140
>AF459643-1|AAO15549.1| 374|Homo sapiens filamin-binding LIM
protein-1 protein.
Length = 374
Score = 29.9 bits (64), Expect = 8.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 384 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 497
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,523,091
Number of Sequences: 237096
Number of extensions: 1980208
Number of successful extensions: 9295
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9262
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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