Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_P24
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-5|AAF98626.2| 586|Caenorhabditis elegans Hypothetical ... 81 9e-16
U41532-8|AAK68318.1| 331|Caenorhabditis elegans Hypothetical pr... 31 0.71
U41532-7|ABD63237.1| 769|Caenorhabditis elegans Hypothetical pr... 31 0.71
U41532-6|AAF99908.2| 812|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 31 0.94
AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous... 29 2.9
AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transien... 29 2.9
AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transien... 29 2.9
AL032634-3|CAE45092.1| 412|Caenorhabditis elegans Hypothetical ... 29 3.8
AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical... 29 3.8
AF047652-5|AAC04391.2| 449|Caenorhabditis elegans Hypothetical ... 28 6.7
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 27 8.8
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 27 8.8
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 27 8.8
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 27 8.8
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 27 8.8
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 27 8.8
>AF039052-5|AAF98626.2| 586|Caenorhabditis elegans Hypothetical
protein T22D1.4 protein.
Length = 586
Score = 80.6 bits (190), Expect = 9e-16
Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 1/139 (0%)
Frame = +1
Query: 133 KLKNVDRTVDISTQLVKVVSKIVLENSGKSPVKHFLFAVEEAAKNNLXFIGAKDSNSKD- 309
K NVDRT+D ++Q+VKV + EN G P L A+ + L FI A SK
Sbjct: 20 KAANVDRTIDATSQIVKVSTLYSFENVGNGPQSKVLIALSKEESATLSFISAGIDGSKGK 79
Query: 310 LRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKY 489
L+++E + + + V+L+ P+ GA V + + T+ L+P P+ I Q + QFV
Sbjct: 80 LKISEKPAE--KDLAVYEVDLRTPVAKGAKVTIRINLRITQVLEPLPSKIQQSDSQFVVL 137
Query: 490 VGNLYTYSPYYTSTQKTSV 546
+ Y S Y T TQKT++
Sbjct: 138 HTSAYVPSLYETVTQKTTI 156
>U41532-8|AAK68318.1| 331|Caenorhabditis elegans Hypothetical
protein F11D5.1b protein.
Length = 331
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 505 TYSPYYTSTQKTSVILNTKTVESFTK 582
TYSP YTST SV L++K VE +K
Sbjct: 53 TYSPSYTSTSLNSVSLSSKYVEEKSK 78
>U41532-7|ABD63237.1| 769|Caenorhabditis elegans Hypothetical
protein F11D5.1c protein.
Length = 769
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 505 TYSPYYTSTQKTSVILNTKTVESFTK 582
TYSP YTST SV L++K VE +K
Sbjct: 491 TYSPSYTSTSLNSVSLSSKYVEEKSK 516
>U41532-6|AAF99908.2| 812|Caenorhabditis elegans Hypothetical
protein F11D5.1a protein.
Length = 812
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 505 TYSPYYTSTQKTSVILNTKTVESFTK 582
TYSP YTST SV L++K VE +K
Sbjct: 534 TYSPSYTSTSLNSVSLSSKYVEEKSK 559
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 30.7 bits (66), Expect = 0.94
Identities = 20/59 (33%), Positives = 24/59 (40%)
Frame = +3
Query: 378 TPKRRCHSKCCCRNCVHQSFTTISDSYNSARRPVCEICWQFVYILPVLYLHTKNQCNSK 554
TP R +CC R+ S S S NS PVC Q P+ NQCN +
Sbjct: 25 TPVSRVRRQCCGRS---SSSCCSSSSSNSYCIPVCMAQCQSSCTTPICQQQCSNQCNQQ 80
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 30.7 bits (66), Expect = 0.94
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 390 RCHSKCCCRNCVHQSFTTISDSYNSARRPVC 482
RC SK C NC + F + D+ S R +C
Sbjct: 109 RCSSKDCNHNCTNTEFDPVCDTNGSVYRNLC 139
>AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous
cation channel proteinprotein.
Length = 816
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 456 YNSARRPVCEICWQFVY--ILPVLYLHTKNQCNSKYKDC*IIY 578
Y S R+ C + Q+ L Y H K C+ KYK C IY
Sbjct: 568 YASMRQNECNLYEQYKNEKSLSYKYEHLKESCDDKYKSCSSIY 610
>AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform a
protein.
Length = 816
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 456 YNSARRPVCEICWQFVY--ILPVLYLHTKNQCNSKYKDC*IIY 578
Y S R+ C + Q+ L Y H K C+ KYK C IY
Sbjct: 568 YASMRQNECNLYEQYKNEKSLSYKYEHLKESCDDKYKSCSSIY 610
>AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform b
protein.
Length = 886
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 456 YNSARRPVCEICWQFVY--ILPVLYLHTKNQCNSKYKDC*IIY 578
Y S R+ C + Q+ L Y H K C+ KYK C IY
Sbjct: 568 YASMRQNECNLYEQYKNEKSLSYKYEHLKESCDDKYKSCSSIY 610
>AL032634-3|CAE45092.1| 412|Caenorhabditis elegans Hypothetical
protein Y39G8C.4 protein.
Length = 412
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +1
Query: 439 QPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKGEA 591
+PYP A T D + + Y Y P TST+ + T F K EA
Sbjct: 291 KPYPPAPTMPPDAY-QPTTEAYYYPPTETSTEYVTAEPTTSIYRYFVKAEA 340
>AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical
protein C46E10.9 protein.
Length = 393
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +3
Query: 426 HQSFTTISDSYNSARRPVCEICWQFVYILPVLYLHTKNQCNSKYKDC*IIYQG*SLSHKL 605
HQ+ T + R+ CEIC + P L H K +K K C I Q ++L
Sbjct: 194 HQTLTGSNGVRPVNRQFKCEICEKQFANKPNLNRHRKIHSGTKSKKCNICQQTLHRENRL 253
Query: 606 MEQLF 620
E L+
Sbjct: 254 QEHLY 258
>AF047652-5|AAC04391.2| 449|Caenorhabditis elegans Hypothetical
protein C34H4.2 protein.
Length = 449
Score = 27.9 bits (59), Expect = 6.7
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Frame = +1
Query: 286 AKDSNSKDLRLAETTVKG--YDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPY--PT 453
A D + +LRL + G Y K ++ G T+ T AL Y T
Sbjct: 49 ASDDDPSNLRLIQIITGGNTYSLADLVSTPQKITISGGLTITSTNPDAVTYALTGYIYVT 108
Query: 454 AITQQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTK 561
Q +D K + ++ Q T+VILNT+
Sbjct: 109 TAQQAQDPLFKVLVVTGAHTLNANGVQATTVILNTE 144
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +2
Query: 485 NMLAICIHTPRTI 523
+M+ +CIHTPRTI
Sbjct: 61 SMITVCIHTPRTI 73
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +2
Query: 485 NMLAICIHTPRTI 523
+M+ +CIHTPRTI
Sbjct: 61 SMITVCIHTPRTI 73
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +2
Query: 485 NMLAICIHTPRTI 523
+M+ +CIHTPRTI
Sbjct: 119 SMITVCIHTPRTI 131
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +2
Query: 485 NMLAICIHTPRTI 523
+M+ +CIHTPRTI
Sbjct: 119 SMITVCIHTPRTI 131
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +2
Query: 485 NMLAICIHTPRTI 523
+M+ +CIHTPRTI
Sbjct: 119 SMITVCIHTPRTI 131
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +2
Query: 485 NMLAICIHTPRTI 523
+M+ +CIHTPRTI
Sbjct: 91 SMITVCIHTPRTI 103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,238,855
Number of Sequences: 27780
Number of extensions: 335821
Number of successful extensions: 967
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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