Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P22
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    77   2e-15
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    27   1.7  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    27   3.0  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    26   3.9  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   6.8  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   9.0  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   9.0  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    25   9.0  

>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
 Frame = +3

Query: 294 VLTHVGLYVLMFLG----FVNQLIFKPKAATXKNREGYAPLYDPFEQFFSRYVYRRVRHC 461
           V T++   VL+ +G    F  +   K      K+ +GYAPLY+ F+ F+ R +  R+  C
Sbjct: 94  VATYLTYLVLIIIGHVRDFFGKRFHKDDYKYLKDNDGYAPLYNHFDNFYVRRLQHRINDC 153

Query: 462 FNRPICSAPGAEVVLKEWESTDHNWTFKFTGVERRCVNLGSYNYL 596
           F+RP    PG  + L    STD N TFK TG     +N+ SYNYL
Sbjct: 154 FSRPTMGVPGRVIRLMNRYSTDSNSTFKLTGDTSLALNVSSYNYL 198


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 399 PLYDPFEQFFSRYVYRRVRHCFNRPICSAPGAEVVLKEWESTDHNWTFK 545
           P  DP      RYV R VR  +   +C +P         ++ D +W F+
Sbjct: 326 PTLDPENVRIKRYVQRLVRCDYTWHLCKSPFKRSTGNTNDNDDPSWRFR 374


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 12  LIGTYLYRMAAKKNGFVDIGDGDSLKTTKKSYEQ 113
           LIG YL  MA+  NG+   G   SLK  ++  EQ
Sbjct: 399 LIGPYLVFMASTINGYEGTGRSLSLKLLQQLREQ 432


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 139 ILPLINFSSCSYDFLVVFSESP 74
           ++  I +S   YDF+  FSESP
Sbjct: 338 LIQAITYSQSKYDFMKKFSESP 359


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 414 FEQFFSRYVYRRVRHCFN 467
           F +FF+R+ + RV+ CF+
Sbjct: 81  FNKFFNRHPFTRVKSCFS 98


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 261 PGTCRTWTSLSLAGRLPPLVSXSALI 184
           P +CR WT+  LAG +   ++ +A++
Sbjct: 373 PASCR-WTACGLAGAIASFITLAAVV 397


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +2

Query: 257 PGLVREVFPTDRRPHAR---WTLRSHVPGLRQPAHIQ 358
           P    E+ PT   P+     WT+ S+VP    P  +Q
Sbjct: 243 PPYPAEIIPTSNVPNREEKDWTVTSNVPNKEPPISVQ 279


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 150 KNGYMKSTQSNGSTPXMTQVEGGGLPKIDWSKYDTF 257
           +N Y+K  Q+ G    +T V     PK+  +KY T+
Sbjct: 419 RNRYLKHLQAYGVDVLLTPVGPSPAPKLGEAKYWTY 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,894
Number of Sequences: 5004
Number of extensions: 46115
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)