Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_P21
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 31 0.19
SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr... 30 0.34
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 29 0.77
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 28 1.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 28 1.4
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 27 1.8
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 27 1.8
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 1.8
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 27 2.4
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom... 26 4.1
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 4.1
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 25 7.2
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 9.5
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 9.5
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 30.7 bits (66), Expect = 0.19
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +3
Query: 387 LATNTEHENEKASLVXKSIEAIDLGLGEAQVMTALASHLQSVEAEKQKLRTQVRRLCQEN 566
L TN E++N++ + +++ E Q + +AS S+ + Q+ L EN
Sbjct: 103 LKTNLENQNKRFDALTTENQSLRRANSELQEQSKIASEQLSIAKD------QIEALQNEN 156
Query: 567 AWLRDELAAAQQHLQASEQRVAQ 635
+ L +++ +A Q L E+R Q
Sbjct: 157 SHLGEQVQSAHQALSDIEERKKQ 179
>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 112
Score = 29.9 bits (64), Expect = 0.34
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +3
Query: 444 EAIDLGLGEAQVMTALASHLQSVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQ 623
+A+ LG+ + + LAS ++AE LR + L ++ + + A+QHLQ ++
Sbjct: 50 KAVYTSLGKMFMKSDLASVRTHLDAEMASLREDIEALQKKQTYHETTASNAEQHLQKIKE 109
Query: 624 RVA 632
++
Sbjct: 110 SIS 112
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 28.7 bits (61), Expect = 0.77
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 513 EAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQL 638
E +KL+ +RLCQ+NA LR A ++ +SE V Q+
Sbjct: 3900 EISLEKLQNSWKRLCQKNAILRTHFAISE---DSSEPMVIQI 3938
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/53 (24%), Positives = 30/53 (56%)
Frame = +3
Query: 492 ASHLQSVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEXEN 650
A+H+ +E + ++L Q RRL ++ + E+ +++L++ + A L +N
Sbjct: 363 AAHITELETKLKELHEQNRRLQRQKSLATQEIDLLRENLKSYDDEEAILSEKN 415
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.9 bits (59), Expect = 1.4
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Frame = +3
Query: 345 LEALRAEHTQLLAGLAT-NTEHENEK--ASLVXKSIE--AIDLGLGEAQVMTALASHLQS 509
+E RAE+ L + L+ ++E+EN +S KS+E L E V L Q
Sbjct: 1034 IEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQKLLDEKDQR 1093
Query: 510 VEAEKQKLRTQVRRLCQENAWLRDELAAAQQ 602
E ++L ++ +L +ENA ++DEL A ++
Sbjct: 1094 -NVELEELTSKYGKLGEENAQIKDELLALRK 1123
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +1
Query: 85 KTFTRPKRN--RPQLFLIGTVLLVNIFVLY 168
K F P+R+ R FL GT+LLV +FVL+
Sbjct: 204 KPFKIPRRHFLRDVAFLTGTILLVIMFVLH 233
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 27.5 bits (58), Expect = 1.8
Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Frame = +3
Query: 252 AYRIKKIESLGRMTAMTQEEMVAGARTVAAGLEALRAEHT--------------QLLAGL 389
A + K+ES + +++ +R VAA L ++A+ + Q+ +
Sbjct: 502 AAEVPKLESQLSQVKKSNDDLQKSSRDVAANLSDVKAKVSEIRKAYDEELAKAKQISLDI 561
Query: 390 ATN---TEHENEKASLVXKSIEAID-LGLGEAQVMTALASHLQSVEAEKQKLRTQVRRLC 557
TN TE N + S++ ++ A+ + +V+ + + ++ + + +++L
Sbjct: 562 ETNKAQTEQVNREYSILEATLNALQKQNKQKGEVLEQVVAESEAAKNMVESSNASIQQLK 621
Query: 558 QENAWLRDELAAAQQHLQASE--QRVAQLEXENK 653
E A E AQ HLQ E QR+ L+ E+K
Sbjct: 622 SEVA--DKEQTLAQLHLQLDEMTQRLVSLDEESK 653
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/107 (19%), Positives = 52/107 (48%)
Frame = +3
Query: 327 RTVAAGLEALRAEHTQLLAGLATNTEHENEKASLVXKSIEAIDLGLGEAQVMTALASHLQ 506
+T+++ + L ++ ++A + +H ++ S + K+I +L + E L
Sbjct: 961 QTISSKYKELEKDYLNIMA----DYQHSSQHLSNLEKAINEKNLNIRELN--EKLMRLDD 1014
Query: 507 SVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQLEXE 647
+ +++ T+V+ L +ENA L+D+ + L + + ++ E E
Sbjct: 1015 ELLLKQRSYDTKVQELREENASLKDQCRTYESQLASLVSKYSETESE 1061
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 477 VMTALASHLQSVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRVAQ 635
V TALAS + ++Q+ + R + A R+ AAAQ+ + E+R A+
Sbjct: 275 VDTALASDPRIKLFKEQEKAAKAARKWEREAGAREAAAAAQKKKEEEERRAAE 327
>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 510 VEAEKQKLRTQVRRLCQENAWLRDELA 590
V+A KLR + + C+ N WL +LA
Sbjct: 13 VQAIWPKLRKEAEKQCEVNPWLAKDLA 39
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -3
Query: 472 ASPNPRSIASMLXFTREAFSFSCSVLVARPASSCVCSALRASSPAATVRAPATISSCV 299
A PN A+ + T + +V ++PA S V SA ASSP+ + A +++ V
Sbjct: 1033 ARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTSA--ASSPSNISKPSAPVANNV 1088
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 96 RKRFIFSL*FKLCAGYAGRYRTRPP 22
+KRF FS F++ G +G Y PP
Sbjct: 20 KKRFFFSPSFQIYGGISGLYDYGPP 44
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 561 ENAWLRDELAAAQQHLQASEQRVAQLEXENK 653
EN +++ELA + LQ +R+A++ E+K
Sbjct: 995 ENQRMKEELAGPLKILQEMARRIAKVSKESK 1025
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 439 ASKLSILDWEKLR 477
+SKLSILDWE L+
Sbjct: 82 SSKLSILDWEALQ 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,700
Number of Sequences: 5004
Number of extensions: 38266
Number of successful extensions: 132
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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