Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P21
         (654 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    26   0.90 
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    26   0.90 
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    26   1.2  
AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    24   3.7  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   6.4  
AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription fact...    23   6.4  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 26.2 bits (55), Expect = 0.90
 Identities = 20/83 (24%), Positives = 38/83 (45%)
 Frame = +3

Query: 399  TEHENEKASLVXKSIEAIDLGLGEAQVMTALASHLQSVEAEKQKLRTQVRRLCQENAWLR 578
            TE  NE  +   K ++    GLG+   +  L++++  +  E +     V++   +   + 
Sbjct: 884  TEQINEITNSKVKVLQTKINGLGKQ--IDKLSANISKLTVEIKTSERNVQKSKDKINSME 941

Query: 579  DELAAAQQHLQASEQRVAQLEXE 647
            DE+ AAQ  ++       QLE E
Sbjct: 942  DEVEAAQSAIRKGNDERTQLEEE 964


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 26.2 bits (55), Expect = 0.90
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +2

Query: 464 GRSSGNDGSGISPSVRRGREAKT---PHAGSQAVPRERLAEGRAGC 592
           G    ++G+G SPS RR    +T   P  G + + R  +A G   C
Sbjct: 11  GEKEDSEGTGTSPSYRRLPNDETRVHPGGGVRGLARIHVAAGFGSC 56


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +3

Query: 264 KKIESLGRMTAMTQEEMVAGARTVAAGLEALRAEHTQLLAGLATNTEHENEKASLVXKSI 443
           KKIES        QE+++   +T   GLE  +    +L   + T+ E  +E  S     +
Sbjct: 432 KKIESEKNEALKRQEKLIDHIKTSRLGLEEQKRIKAELSQDVGTSKERIHELQS----EL 487

Query: 444 EAIDLGLGEAQV 479
           + +   LG+A++
Sbjct: 488 DNVREQLGDAKI 499


>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +3

Query: 207 LFLLIKILIMSKTL-NAYRIKKIESLGRMTAMTQEEMVAGARTVAAGLEALRAEHTQLLA 383
           + LL   + +S ++ +AYRI  IES   +  +   ++V       A  +A R +H  +L+
Sbjct: 211 ILLLATFVFVSVSMGHAYRISFIESSATVQNILTHKIVCSWDYGIANGKAARLKHATILS 270

Query: 384 GLATNTEHENEKASLVXK 437
            L       N   + V +
Sbjct: 271 ELRDYLAQRNRTPAPVGR 288


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 471 AQVMTALASHLQSVEAEKQKLRTQVRRLCQENAWLRDE 584
           A V +  A H   +E  K+    +VRRL +  AW  ++
Sbjct: 375 ATVASVFAQHDTELERIKRYSTPKVRRLLEVLAWFGEQ 412


>AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription factor
           protein.
          Length = 391

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 615 KPAGVAELQPARPSARRSLGT 553
           +P   AE +PA+ S RR +GT
Sbjct: 66  EPISDAEEEPAKGSKRRKVGT 86


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 568,912
Number of Sequences: 2352
Number of extensions: 9126
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)