Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_P20
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    85   5e-18
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    85   5e-18
SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch...    25   7.9  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 85.0 bits (201), Expect = 5e-18
 Identities = 37/47 (78%), Positives = 41/47 (87%)
 Frame = +1

Query: 157 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 297
           VIVKFLTVM KHGYI EF  +DDHR+GKIV+ L GR+NKCGVISPRF
Sbjct: 33  VIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRF 79



 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 29/47 (61%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +2

Query: 296 FDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEXXXKHLGGKI 433
           F+V + DIE+W N LLPSRQ G +VLTTS GIM H E   K  GGKI
Sbjct: 79  FNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKI 125



 Score = 44.4 bits (100), Expect = 9e-06
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = +3

Query: 60  MVRMNVLSDALKSIHNAEKRGKRQVLIRP 146
           MVR +VL+D L +I NAE+RG+RQVLIRP
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRP 29


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 85.0 bits (201), Expect = 5e-18
 Identities = 37/47 (78%), Positives = 41/47 (87%)
 Frame = +1

Query: 157 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 297
           VIVKFLTVM KHGYI EF  +DDHR+GKIV+ L GR+NKCGVISPRF
Sbjct: 33  VIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRF 79



 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 29/47 (61%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +2

Query: 296 FDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEXXXKHLGGKI 433
           F+V + DIE+W N LLPSRQ G +VLTTS GIM H E   K  GGKI
Sbjct: 79  FNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKI 125



 Score = 44.4 bits (100), Expect = 9e-06
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = +3

Query: 60  MVRMNVLSDALKSIHNAEKRGKRQVLIRP 146
           MVR +VL+D L +I NAE+RG+RQVLIRP
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRP 29


>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
           Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 321

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 263 D*TSVVSFHLXFDVPINDIERWTNLLPSRQFGYLVLTTSGGIMDHE 400
           D   +V   L FDVP+   + W NL      G +V+T S  IM ++
Sbjct: 159 DVRGLVQQKLGFDVPVGTADSW-NLWAGGS-GDVVITASDFIMSND 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,469
Number of Sequences: 5004
Number of extensions: 29477
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)