Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_P20
(482 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 90 7e-19
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 90 7e-19
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 52 3e-07
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 38 0.004
08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864... 28 4.5
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 27 7.9
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 90.2 bits (214), Expect = 7e-19
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = +1
Query: 157 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 297
VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRF
Sbjct: 33 VIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRF 79
Score = 71.3 bits (167), Expect = 4e-13
Identities = 32/47 (68%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Frame = +2
Query: 296 FDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEXXXKHLGGKI 433
FDV + +IE WT LLPSRQFGY+VLTTS GIMDHEE K++GGK+
Sbjct: 79 FDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125
Score = 51.6 bits (118), Expect = 3e-07
Identities = 23/29 (79%), Positives = 29/29 (100%)
Frame = +3
Query: 60 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 146
MVR++VL+DALK+++NAEKRGKRQVLIRP
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVLIRP 29
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 90.2 bits (214), Expect = 7e-19
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = +1
Query: 157 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 297
VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRF
Sbjct: 33 VIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRF 79
Score = 70.1 bits (164), Expect = 9e-13
Identities = 32/46 (69%), Positives = 37/46 (80%), Gaps = 1/46 (2%)
Frame = +2
Query: 296 FDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEXXXKHLGGK 430
FDV + +IE WT LLPSRQFGY+VLTTS GIMDHEE K++GGK
Sbjct: 79 FDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGK 124
Score = 50.8 bits (116), Expect = 6e-07
Identities = 22/29 (75%), Positives = 29/29 (100%)
Frame = +3
Query: 60 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 146
MVR++VL+DALK+++NAEKRGKRQV+IRP
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVMIRP 29
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 51.6 bits (118), Expect = 3e-07
Identities = 22/46 (47%), Positives = 30/46 (65%)
Frame = +1
Query: 157 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPR 294
V+V FL +M GYI +FE++D HR GKI V L GR+ C ++ R
Sbjct: 32 VMVSFLNIMKHRGYIKKFEVIDPHRVGKINVELHGRIKDCKALTYR 77
Score = 50.0 bits (114), Expect = 1e-06
Identities = 19/46 (41%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Frame = +2
Query: 299 DVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEXXXKHLGGKI 433
D+ +IE++ +LP+RQ+GY+V+TT G++DHEE +++GG++
Sbjct: 79 DIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQV 124
Score = 31.5 bits (68), Expect = 0.37
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = +3
Query: 75 VLSDALKSIHNAEKRGKRQVLIRP 146
+L+DAL+++ NAE+RGK L++P
Sbjct: 5 ILNDALRTMVNAERRGKATALLQP 28
>01_01_0365 -
2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 37.9 bits (84), Expect = 0.004
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +1
Query: 217 VDDHRAGKIVVNLTGRLNKCGVISPR 294
VDDH++G+I++ GRLNK GVIS R
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFR 937
>08_02_0290 +
15383473-15383669,15385057-15385267,15386389-15386440,
15386545-15386863,15387022-15387121,15387391-15387657,
15387780-15387857,15387943-15388032,15388119-15388168,
15388267-15388366,15388777-15388875,15389023-15389136,
15389238-15389412,15389726-15390132,15390565-15390639,
15391412-15391438
Length = 786
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 36 EARS*ILAMVRMNVLSDALKSIHNAEKRGKRQVLIRPXF 152
E R + ++ L+ + K H+ +KRGKR+V RP F
Sbjct: 183 ERRRLSIGSLKKKALNASNKLTHSLKKRGKRKVENRPSF 221
>03_01_0224 -
1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 302 HQXRGEMTPHLFSLPVRFTTILPAL*SSTISNSP 201
H RG P + P + PA+ ++T SNSP
Sbjct: 794 HMVRGAAPPPASTAPPAANNVTPAINATTASNSP 827
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,894,361
Number of Sequences: 37544
Number of extensions: 188825
Number of successful extensions: 308
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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